miRNA display CGI


Results 101 - 120 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6507 3' -68.6 NC_001847.1 + 111794 0.72 0.138497
Target:  5'- cCCGGGGGCGGGcagacGGGGGuGGGgGCUg-- -3'
miRNA:   3'- -GGCCCCCGCCC-----CCCUC-CUCgCGGgau -5'
6507 3' -68.6 NC_001847.1 + 113684 0.72 0.132012
Target:  5'- cCCGcGGGGCGGGaGGGggaaggGGGAGCcggagcuuugGCCCg- -3'
miRNA:   3'- -GGC-CCCCGCCC-CCC------UCCUCG----------CGGGau -5'
6507 3' -68.6 NC_001847.1 + 114053 0.7 0.175498
Target:  5'- aCGGGGGggaGGGGGGAaGGGGacagucgggcccCGCCCc- -3'
miRNA:   3'- gGCCCCCg--CCCCCCU-CCUC------------GCGGGau -5'
6507 3' -68.6 NC_001847.1 + 114930 0.72 0.141849
Target:  5'- aCGGGGGCucgcguuuGGcGGGGcGGGGCGCCg-- -3'
miRNA:   3'- gGCCCCCG--------CC-CCCCuCCUCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 115554 0.69 0.201722
Target:  5'- cCCGgaucGGGGCGGGGaGGGGGGCGaaacuCCUUAa -3'
miRNA:   3'- -GGC----CCCCGCCCCcCUCCUCGC-----GGGAU- -5'
6507 3' -68.6 NC_001847.1 + 115927 0.66 0.334263
Target:  5'- -gGGGGGCugccgucGGGaacgagcaGGGAGGGGuCGCCgCUGg -3'
miRNA:   3'- ggCCCCCG-------CCC--------CCCUCCUC-GCGG-GAU- -5'
6507 3' -68.6 NC_001847.1 + 119106 0.68 0.241922
Target:  5'- gCCGcGGGGCGGcGGGGcAGGcauGGgGCCg-- -3'
miRNA:   3'- -GGC-CCCCGCC-CCCC-UCC---UCgCGGgau -5'
6507 3' -68.6 NC_001847.1 + 119226 0.69 0.226115
Target:  5'- aCCGcGGGGCGGcGGGGcAGGcauGGgGCCg-- -3'
miRNA:   3'- -GGC-CCCCGCC-CCCC-UCC---UCgCGGgau -5'
6507 3' -68.6 NC_001847.1 + 119651 0.66 0.356448
Target:  5'- aCGGGGcagcCGGGcGGGAGGgcaacGGCgGCCCc- -3'
miRNA:   3'- gGCCCCc---GCCC-CCCUCC-----UCG-CGGGau -5'
6507 3' -68.6 NC_001847.1 + 121363 0.68 0.236553
Target:  5'- gCGGcGGGCGGGGuGGGGAGCGg---- -3'
miRNA:   3'- gGCC-CCCGCCCCcCUCCUCGCgggau -5'
6507 3' -68.6 NC_001847.1 + 121401 0.67 0.31444
Target:  5'- aCCGGGGGCaGGagcugcguggaGGGcGGAGCcguugagcgGCCCg- -3'
miRNA:   3'- -GGCCCCCGcCC-----------CCCuCCUCG---------CGGGau -5'
6507 3' -68.6 NC_001847.1 + 122215 0.68 0.270299
Target:  5'- gCCGGGGcCGGGuGcccucAGGGGCGCCCa- -3'
miRNA:   3'- -GGCCCCcGCCCcCc----UCCUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 124381 0.66 0.334963
Target:  5'- gCCGGGGaGaGGGcGGGAGaGGGgGCCg-- -3'
miRNA:   3'- -GGCCCC-CgCCC-CCCUC-CUCgCGGgau -5'
6507 3' -68.6 NC_001847.1 + 124720 0.66 0.323897
Target:  5'- gCGGGGGCggcagcgcgaaccgcGcGGGGGAGGgccgucauaaAGCgGCCCc- -3'
miRNA:   3'- gGCCCCCG---------------C-CCCCCUCC----------UCG-CGGGau -5'
6507 3' -68.6 NC_001847.1 + 124922 0.67 0.282379
Target:  5'- gCCGGGGGCGacaGcGGGcGCGCCCUGg -3'
miRNA:   3'- -GGCCCCCGCcccCcUCCuCGCGGGAU- -5'
6507 3' -68.6 NC_001847.1 + 125360 0.69 0.221044
Target:  5'- -aGGGGGCGGGacagagaaGaGGAGGAgcgguaagcggGCGCCCc- -3'
miRNA:   3'- ggCCCCCGCCC--------C-CCUCCU-----------CGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 125588 0.67 0.282379
Target:  5'- aUGGGGGCgagggaucGGGGGGAuggggauggGGGGCGaggggaaCCUGg -3'
miRNA:   3'- gGCCCCCG--------CCCCCCU---------CCUCGCg------GGAU- -5'
6507 3' -68.6 NC_001847.1 + 127146 0.73 0.119584
Target:  5'- gCGGGGGCGauguccaaguggaGGGGGGGcccGAGCaggGCCCUAa -3'
miRNA:   3'- gGCCCCCGC-------------CCCCCUC---CUCG---CGGGAU- -5'
6507 3' -68.6 NC_001847.1 + 128722 0.71 0.159742
Target:  5'- gCGGGGuGCGaGGGGGAGGGGguggugGCCgUGg -3'
miRNA:   3'- gGCCCC-CGC-CCCCCUCCUCg-----CGGgAU- -5'
6507 3' -68.6 NC_001847.1 + 128904 0.69 0.211193
Target:  5'- gCUGGGGGCGGaGGGAGcaguGGCGCUg-- -3'
miRNA:   3'- -GGCCCCCGCCcCCCUCc---UCGCGGgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.