miRNA display CGI


Results 41 - 60 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6507 3' -68.6 NC_001847.1 + 102848 0.7 0.177147
Target:  5'- cCCGGGGGgguguuuuUGGGGGGGGGcggaaauuucggcgcGGCggGCCCg- -3'
miRNA:   3'- -GGCCCCC--------GCCCCCCUCC---------------UCG--CGGGau -5'
6507 3' -68.6 NC_001847.1 + 102683 0.77 0.054373
Target:  5'- -gGGGGGCGGGGcGGGGGcagGGCGCCg-- -3'
miRNA:   3'- ggCCCCCGCCCC-CCUCC---UCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 101161 0.66 0.356448
Target:  5'- gCCGGGGcCGGGgccGGGGucGGGGCGCggUCUAa -3'
miRNA:   3'- -GGCCCCcGCCC---CCCU--CCUCGCG--GGAU- -5'
6507 3' -68.6 NC_001847.1 + 101089 0.67 0.276286
Target:  5'- gCCGGGucGGCGGGGcGGGcGGGcGCGUUCg- -3'
miRNA:   3'- -GGCCC--CCGCCCC-CCU-CCU-CGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 100871 0.68 0.264416
Target:  5'- gCCGGGGGuCGGcGGcAGGGGCGCggCCg- -3'
miRNA:   3'- -GGCCCCC-GCCcCCcUCCUCGCG--GGau -5'
6507 3' -68.6 NC_001847.1 + 99778 0.68 0.241922
Target:  5'- gCGGcuuuGGGCGGGGGGc--AGCGCCUg- -3'
miRNA:   3'- gGCC----CCCGCCCCCCuccUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 95253 0.74 0.098415
Target:  5'- aUCGGGGGCGcgaucGGGGGcgcgaucGGGGGCGCCg-- -3'
miRNA:   3'- -GGCCCCCGC-----CCCCC-------UCCUCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 95193 0.69 0.215578
Target:  5'- aUCGGGGGCGcgaucGGGGGcgcgaucGGGGGCGCg--- -3'
miRNA:   3'- -GGCCCCCGC-----CCCCC-------UCCUCGCGggau -5'
6507 3' -68.6 NC_001847.1 + 95160 0.69 0.21071
Target:  5'- gCCGGcauGGCGGGGGGcgcgaucGGGGGCGCg--- -3'
miRNA:   3'- -GGCCc--CCGCCCCCC-------UCCUCGCGggau -5'
6507 3' -68.6 NC_001847.1 + 95091 0.69 0.225093
Target:  5'- gCUGGcGuGGCGGGGGGcgcgauuGGGGGCGCggacgagCCUGc -3'
miRNA:   3'- -GGCC-C-CCGCCCCCC-------UCCUCGCG-------GGAU- -5'
6507 3' -68.6 NC_001847.1 + 90754 0.67 0.31444
Target:  5'- gCCGGGcccCGGGaGcGGGAGCGCCCUu -3'
miRNA:   3'- -GGCCCcc-GCCCcCcUCCUCGCGGGAu -5'
6507 3' -68.6 NC_001847.1 + 88337 0.68 0.236553
Target:  5'- -aGGGGGgagaagaagaCGGGGGGAacgaGGGGCGCgCg- -3'
miRNA:   3'- ggCCCCC----------GCCCCCCU----CCUCGCGgGau -5'
6507 3' -68.6 NC_001847.1 + 88257 0.71 0.156008
Target:  5'- gCGGggcgccGGGCGGGgacGGGGGGAGCGCuucgCCUGc -3'
miRNA:   3'- gGCC------CCCGCCC---CCCUCCUCGCG----GGAU- -5'
6507 3' -68.6 NC_001847.1 + 84538 0.71 0.156008
Target:  5'- uUGGcGGGCGGGGcGGGGcGuGCGCCUc- -3'
miRNA:   3'- gGCC-CCCGCCCC-CCUC-CuCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 84466 0.75 0.07904
Target:  5'- gUGGGGaGCGGGGGGGGGGGCGg---- -3'
miRNA:   3'- gGCCCC-CGCCCCCCUCCUCGCgggau -5'
6507 3' -68.6 NC_001847.1 + 84233 0.69 0.21607
Target:  5'- gCCGGGGccgcCGcGGGGGAGGAGgGCg--- -3'
miRNA:   3'- -GGCCCCc---GC-CCCCCUCCUCgCGggau -5'
6507 3' -68.6 NC_001847.1 + 79542 0.73 0.113925
Target:  5'- gUCGGGGcCGGGGGGgcuggggcucgcgGGGGGCGCCg-- -3'
miRNA:   3'- -GGCCCCcGCCCCCC-------------UCCUCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 77457 0.69 0.221044
Target:  5'- gUCGGcGGGCuGGGGcGGGcgccGGGCGCCCg- -3'
miRNA:   3'- -GGCC-CCCGcCCCC-CUC----CUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 76792 0.69 0.214597
Target:  5'- gCUGGGacaauaaacgcaaaGGCGGGGGGAGGgccacagagaccGGUGCCg-- -3'
miRNA:   3'- -GGCCC--------------CCGCCCCCCUCC------------UCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 76655 0.66 0.34918
Target:  5'- cCCGaGGGC--GGGGAGG-GCGCCUUu -3'
miRNA:   3'- -GGCcCCCGccCCCCUCCuCGCGGGAu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.