miRNA display CGI


Results 61 - 80 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6507 3' -68.6 NC_001847.1 + 76405 0.72 0.145274
Target:  5'- gCCGGGGGCcgcggcGGGGGcaccccgcggcGGGAGCGCgCg- -3'
miRNA:   3'- -GGCCCCCGc-----CCCCC-----------UCCUCGCGgGau -5'
6507 3' -68.6 NC_001847.1 + 75009 0.74 0.091654
Target:  5'- gCCGGcGGGCGGGGGGccagcGGGcagaaGGCGCCg-- -3'
miRNA:   3'- -GGCC-CCCGCCCCCC-----UCC-----UCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 70697 0.72 0.135219
Target:  5'- gCCGcGGGCGGcGGcGGGGGCGCCCg- -3'
miRNA:   3'- -GGCcCCCGCCcCCcUCCUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 68221 0.73 0.122807
Target:  5'- -aGGGGGaagGGGGGGAGGGcaacgcGCGCgCUAa -3'
miRNA:   3'- ggCCCCCg--CCCCCCUCCU------CGCGgGAU- -5'
6507 3' -68.6 NC_001847.1 + 64467 0.69 0.221044
Target:  5'- gCGGcGGcGCGGGGGGccgaagcaGGGAGCacagagacGCCCg- -3'
miRNA:   3'- gGCC-CC-CGCCCCCC--------UCCUCG--------CGGGau -5'
6507 3' -68.6 NC_001847.1 + 62489 0.67 0.275682
Target:  5'- gCCGGcGGGCGGccgcGGGGuGGcggccacAGCcGCCCUu -3'
miRNA:   3'- -GGCC-CCCGCC----CCCCuCC-------UCG-CGGGAu -5'
6507 3' -68.6 NC_001847.1 + 61319 0.74 0.101101
Target:  5'- gCGGGuGcGCGGGGcGGGGcGGGCGCgCCUAg -3'
miRNA:   3'- gGCCC-C-CGCCCC-CCUC-CUCGCG-GGAU- -5'
6507 3' -68.6 NC_001847.1 + 59554 0.69 0.211193
Target:  5'- gUGGGGGCGGcGGGGGcGGUGCCg-- -3'
miRNA:   3'- gGCCCCCGCCcCCCUCcUCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 57660 0.7 0.175498
Target:  5'- cUCGGGccGGCGGGccGGGccGGGCGCCCg- -3'
miRNA:   3'- -GGCCC--CCGCCC--CCCucCUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 56825 0.78 0.046758
Target:  5'- cCUGGGGGCGcGGGGaGGGGGCGgCCCa- -3'
miRNA:   3'- -GGCCCCCGC-CCCCcUCCUCGC-GGGau -5'
6507 3' -68.6 NC_001847.1 + 54914 0.72 0.132012
Target:  5'- cCCGGGagcucGCGGGGGucuuGAGCGCCCUGc -3'
miRNA:   3'- -GGCCCc----CGCCCCCcuc-CUCGCGGGAU- -5'
6507 3' -68.6 NC_001847.1 + 54556 0.68 0.258638
Target:  5'- gCGGGGGCGGcGcGGAGGAcGacgGCCCc- -3'
miRNA:   3'- gGCCCCCGCCcC-CCUCCU-Cg--CGGGau -5'
6507 3' -68.6 NC_001847.1 + 54542 0.84 0.018259
Target:  5'- gCGGGGGCGGGGGcGGGGAagacgcagucGCGCCCg- -3'
miRNA:   3'- gGCCCCCGCCCCC-CUCCU----------CGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 54518 0.74 0.096268
Target:  5'- -gGGGGGCGGuGGGGcGGGGcCGUCCg- -3'
miRNA:   3'- ggCCCCCGCC-CCCCuCCUC-GCGGGau -5'
6507 3' -68.6 NC_001847.1 + 54452 0.7 0.179648
Target:  5'- -gGGGGGCGGGGacgagcccgaGGAGGAGgGCg--- -3'
miRNA:   3'- ggCCCCCGCCCC----------CCUCCUCgCGggau -5'
6507 3' -68.6 NC_001847.1 + 54386 0.67 0.301295
Target:  5'- gCGGcGGGCGGccgcGGGcGAGGcgGGCGCCg-- -3'
miRNA:   3'- gGCC-CCCGCC----CCC-CUCC--UCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 53834 0.7 0.194413
Target:  5'- gCGGGGGCGcugaagagccggcgcGGGGGucaGGGGGUGCUgUGg -3'
miRNA:   3'- gGCCCCCGC---------------CCCCC---UCCUCGCGGgAU- -5'
6507 3' -68.6 NC_001847.1 + 53614 0.67 0.282379
Target:  5'- gUGGcGGGCGGcGGGGuGGcacCGCCCg- -3'
miRNA:   3'- gGCC-CCCGCC-CCCCuCCuc-GCGGGau -5'
6507 3' -68.6 NC_001847.1 + 52977 0.67 0.307814
Target:  5'- -aGGGGGgGGGGaaGGGGGAcGCGCa--- -3'
miRNA:   3'- ggCCCCCgCCCC--CCUCCU-CGCGggau -5'
6507 3' -68.6 NC_001847.1 + 52707 0.68 0.270299
Target:  5'- gCGGGGuugcCGGgaagaccaaGGGGAGGAGCGCgCa- -3'
miRNA:   3'- gGCCCCc---GCC---------CCCCUCCUCGCGgGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.