miRNA display CGI


Results 81 - 100 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6507 3' -68.6 NC_001847.1 + 51528 0.66 0.334963
Target:  5'- gCCGGcaGGCGGGGGc---GGCGCCCa- -3'
miRNA:   3'- -GGCCc-CCGCCCCCcuccUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 46784 0.74 0.093934
Target:  5'- -aGGGGG-GGGGGGGGGAGgGCUa-- -3'
miRNA:   3'- ggCCCCCgCCCCCCUCCUCgCGGgau -5'
6507 3' -68.6 NC_001847.1 + 45106 0.67 0.282379
Target:  5'- aCGGGGGUGGGGGcAGacaacaGAGCGCg--- -3'
miRNA:   3'- gGCCCCCGCCCCCcUC------CUCGCGggau -5'
6507 3' -68.6 NC_001847.1 + 43231 0.68 0.236553
Target:  5'- cCCGGuGGCGGuGGGGGcgcgcgggcGGcgcGGCGCCCg- -3'
miRNA:   3'- -GGCCcCCGCC-CCCCU---------CC---UCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 35176 0.68 0.247391
Target:  5'- gCCGGGGGCacgcGGccuucgaGGAGGAGCGCgCg- -3'
miRNA:   3'- -GGCCCCCGc---CCc------CCUCCUCGCGgGau -5'
6507 3' -68.6 NC_001847.1 + 34667 0.69 0.20641
Target:  5'- -aGGGGGCGGccgcgcagcGGcaGGAGGAGCGCUg-- -3'
miRNA:   3'- ggCCCCCGCC---------CC--CCUCCUCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 33872 0.72 0.141849
Target:  5'- -gGGGGGCGGGcagugaggaGGGAcgaggGGAGCGCCg-- -3'
miRNA:   3'- ggCCCCCGCCC---------CCCU-----CCUCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 33117 0.67 0.30389
Target:  5'- gCCGGGGGCcccguaccugcggcgGGuGGuGGAGugggucgaGGGCGCUCUGg -3'
miRNA:   3'- -GGCCCCCG---------------CC-CC-CCUC--------CUCGCGGGAU- -5'
6507 3' -68.6 NC_001847.1 + 32954 0.71 0.148775
Target:  5'- -gGGGGGCGGaggaggccGGGGAGGccagaGGCGCCg-- -3'
miRNA:   3'- ggCCCCCGCC--------CCCCUCC-----UCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 32915 0.68 0.270299
Target:  5'- gCCGGGGccGCGGacGGGAGGAG-GCCg-- -3'
miRNA:   3'- -GGCCCC--CGCCc-CCCUCCUCgCGGgau -5'
6507 3' -68.6 NC_001847.1 + 32682 0.68 0.270299
Target:  5'- uCCGccGGUGGcuGGAGGGGCGCCCg- -3'
miRNA:   3'- -GGCccCCGCCccCCUCCUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 32222 0.7 0.179648
Target:  5'- gCCGGGGcGCGGGGcgccGGAcccaGGGGCggaGCCCa- -3'
miRNA:   3'- -GGCCCC-CGCCCC----CCU----CCUCG---CGGGau -5'
6507 3' -68.6 NC_001847.1 + 32135 0.82 0.022978
Target:  5'- gCCGGGGGCGGGGGcGGGGGCggggGCCCc- -3'
miRNA:   3'- -GGCCCCCGCCCCCcUCCUCG----CGGGau -5'
6507 3' -68.6 NC_001847.1 + 32076 0.72 0.125504
Target:  5'- gCGGGGGCcggggaagauuGGGGGGAGGGgggaaacgcggcuGCGgCCCg- -3'
miRNA:   3'- gGCCCCCG-----------CCCCCCUCCU-------------CGC-GGGau -5'
6507 3' -68.6 NC_001847.1 + 32029 0.68 0.270299
Target:  5'- uCCGgcGGGGCGcGGGGAcG-GCGCCCg- -3'
miRNA:   3'- -GGC--CCCCGCcCCCCUcCuCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 31816 0.66 0.321174
Target:  5'- gUGGGcGGCGcGGGGGcagagugcgAGGAcccuacguucgcGCGCCCg- -3'
miRNA:   3'- gGCCC-CCGC-CCCCC---------UCCU------------CGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 31701 0.83 0.018732
Target:  5'- cUCGGGGGCGGGGGGAGGcgcgggccgcGCGCCgCUGc -3'
miRNA:   3'- -GGCCCCCGCCCCCCUCCu---------CGCGG-GAU- -5'
6507 3' -68.6 NC_001847.1 + 29918 0.69 0.21607
Target:  5'- gCgGGGGGCcccucGGGGGAGGAGa-CUCUGg -3'
miRNA:   3'- -GgCCCCCGc----CCCCCUCCUCgcGGGAU- -5'
6507 3' -68.6 NC_001847.1 + 29877 0.67 0.307814
Target:  5'- aCGGGGaCGGGGacggcGAGGcGGCGgCCCUGc -3'
miRNA:   3'- gGCCCCcGCCCCc----CUCC-UCGC-GGGAU- -5'
6507 3' -68.6 NC_001847.1 + 29601 0.66 0.334263
Target:  5'- gCCGGGGGCcgguggaaguGGaGGuGGAGGAcaugagggccgggGCGCCg-- -3'
miRNA:   3'- -GGCCCCCG----------CC-CC-CCUCCU-------------CGCGGgau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.