Results 41 - 60 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6507 | 3' | -68.6 | NC_001847.1 | + | 71 | 0.76 | 0.06642 |
Target: 5'- gCGGGGGCGGGGuGGGGGAuggGCGCg--- -3' miRNA: 3'- gGCCCCCGCCCC-CCUCCU---CGCGggau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 102683 | 0.77 | 0.054373 |
Target: 5'- -gGGGGGCGGGGcGGGGGcagGGCGCCg-- -3' miRNA: 3'- ggCCCCCGCCCC-CCUCC---UCGCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 110237 | 0.79 | 0.044458 |
Target: 5'- -gGGGGGgGGGGGGGGGGGCguacuugcagcgGCCCg- -3' miRNA: 3'- ggCCCCCgCCCCCCUCCUCG------------CGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 134948 | 0.82 | 0.022978 |
Target: 5'- gCCGGGGGCGGGGGcGGGGGCggggGCCCc- -3' miRNA: 3'- -GGCCCCCGCCCCCcUCCUCG----CGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 134514 | 0.83 | 0.018732 |
Target: 5'- cUCGGGGGCGGGGGGAGGcgcgggccgcGCGCCgCUGc -3' miRNA: 3'- -GGCCCCCGCCCCCCUCCu---------CGCGG-GAU- -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 113684 | 0.72 | 0.132012 |
Target: 5'- cCCGcGGGGCGGGaGGGggaaggGGGAGCcggagcuuugGCCCg- -3' miRNA: 3'- -GGC-CCCCGCCC-CCC------UCCUCG----------CGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 111794 | 0.72 | 0.138497 |
Target: 5'- cCCGGGGGCGGGcagacGGGGGuGGGgGCUg-- -3' miRNA: 3'- -GGCCCCCGCCC-----CCCUC-CUCgCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 59554 | 0.69 | 0.211193 |
Target: 5'- gUGGGGGCGGcGGGGGcGGUGCCg-- -3' miRNA: 3'- gGCCCCCGCCcCCCUCcUCGCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 12999 | 0.69 | 0.211193 |
Target: 5'- gCUGGGGGUGGGGGGccu-GUGCCg-- -3' miRNA: 3'- -GGCCCCCGCCCCCCuccuCGCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 34667 | 0.69 | 0.20641 |
Target: 5'- -aGGGGGCGGccgcgcagcGGcaGGAGGAGCGCUg-- -3' miRNA: 3'- ggCCCCCGCC---------CC--CCUCCUCGCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 130727 | 0.7 | 0.192622 |
Target: 5'- -aGGGGGCGGaGGcgcGGAGGAcgcggacaGCGCCUg- -3' miRNA: 3'- ggCCCCCGCC-CC---CCUCCU--------CGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 135035 | 0.7 | 0.179648 |
Target: 5'- gCCGGGGcGCGGGGcgccGGAcccaGGGGCggaGCCCa- -3' miRNA: 3'- -GGCCCC-CGCCCC----CCU----CCUCG---CGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 54452 | 0.7 | 0.179648 |
Target: 5'- -gGGGGGCGGGGacgagcccgaGGAGGAGgGCg--- -3' miRNA: 3'- ggCCCCCGCCCC----------CCUCCUCgCGggau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 102848 | 0.7 | 0.177147 |
Target: 5'- cCCGGGGGgguguuuuUGGGGGGGGGcggaaauuucggcgcGGCggGCCCg- -3' miRNA: 3'- -GGCCCCC--------GCCCCCCUCC---------------UCG--CGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 114053 | 0.7 | 0.175498 |
Target: 5'- aCGGGGGggaGGGGGGAaGGGGacagucgggcccCGCCCc- -3' miRNA: 3'- gGCCCCCg--CCCCCCU-CCUC------------GCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 128722 | 0.71 | 0.159742 |
Target: 5'- gCGGGGuGCGaGGGGGAGGGGguggugGCCgUGg -3' miRNA: 3'- gGCCCC-CGC-CCCCCUCCUCg-----CGGgAU- -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 84538 | 0.71 | 0.156008 |
Target: 5'- uUGGcGGGCGGGGcGGGGcGuGCGCCUc- -3' miRNA: 3'- gGCC-CCCGCCCC-CCUC-CuCGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 76405 | 0.72 | 0.145274 |
Target: 5'- gCCGGGGGCcgcggcGGGGGcaccccgcggcGGGAGCGCgCg- -3' miRNA: 3'- -GGCCCCCGc-----CCCCC-----------UCCUCGCGgGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 114930 | 0.72 | 0.141849 |
Target: 5'- aCGGGGGCucgcguuuGGcGGGGcGGGGCGCCg-- -3' miRNA: 3'- gGCCCCCG--------CC-CCCCuCCUCGCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 132731 | 0.72 | 0.139829 |
Target: 5'- gCGGGGGCcccucGGGGGAGGAcgacucugggccgagGCGCCg-- -3' miRNA: 3'- gGCCCCCGc----CCCCCUCCU---------------CGCGGgau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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