miRNA display CGI


Results 21 - 40 of 698 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6507 5' -53.9 NC_001847.1 + 3077 0.67 0.919216
Target:  5'- uCGUAgugcAGCaGCGCGAUGaCGCcCCCCa -3'
miRNA:   3'- -GUAUau--UCG-CGCGCUGUaGCGcGGGG- -5'
6507 5' -53.9 NC_001847.1 + 3471 0.71 0.740244
Target:  5'- ----cAAGCGCGCGcCggCGCGCCg- -3'
miRNA:   3'- guauaUUCGCGCGCuGuaGCGCGGgg -5'
6507 5' -53.9 NC_001847.1 + 3708 0.68 0.872914
Target:  5'- --gGUAGGCGCgGCaAUcgCGCGCgCCg -3'
miRNA:   3'- guaUAUUCGCG-CGcUGuaGCGCGgGG- -5'
6507 5' -53.9 NC_001847.1 + 3731 0.66 0.953108
Target:  5'- -----uAGCGCGCGGCcgccUCGCggaucucggggcaGUCCCa -3'
miRNA:   3'- guauauUCGCGCGCUGu---AGCG-------------CGGGG- -5'
6507 5' -53.9 NC_001847.1 + 3813 0.66 0.953514
Target:  5'- ----cGGGCG-GCGGCggCGCGCUgCCg -3'
miRNA:   3'- guauaUUCGCgCGCUGuaGCGCGG-GG- -5'
6507 5' -53.9 NC_001847.1 + 3905 0.68 0.900812
Target:  5'- gCGUAgccAGCGCG-GGCGccgguugCGCGCCCg -3'
miRNA:   3'- -GUAUau-UCGCGCgCUGUa------GCGCGGGg -5'
6507 5' -53.9 NC_001847.1 + 3937 0.67 0.913327
Target:  5'- -cUGgcAGCGgGCGGCGagCGCGaCCCa -3'
miRNA:   3'- guAUauUCGCgCGCUGUa-GCGCgGGG- -5'
6507 5' -53.9 NC_001847.1 + 3985 0.67 0.924858
Target:  5'- --cGUGAGCacgccaGCGCGGCcaaguuaacaGUC-CGCCCCc -3'
miRNA:   3'- guaUAUUCG------CGCGCUG----------UAGcGCGGGG- -5'
6507 5' -53.9 NC_001847.1 + 3992 0.67 0.919216
Target:  5'- ----cGGGCGCGCGGCccCGCggggcgccggGCCCg -3'
miRNA:   3'- guauaUUCGCGCGCUGuaGCG----------CGGGg -5'
6507 5' -53.9 NC_001847.1 + 4025 0.67 0.93025
Target:  5'- ----cGAGCagcauacCGCG-CcgCGCGCCCCg -3'
miRNA:   3'- guauaUUCGc------GCGCuGuaGCGCGGGG- -5'
6507 5' -53.9 NC_001847.1 + 4168 0.67 0.924858
Target:  5'- ----cGAGCGgGCcuuguuuugGGCcgCGCGCCCg -3'
miRNA:   3'- guauaUUCGCgCG---------CUGuaGCGCGGGg -5'
6507 5' -53.9 NC_001847.1 + 4288 0.7 0.806811
Target:  5'- ----gAGGCGCGCGcCGgcgccuugguacUCGCGCgCCg -3'
miRNA:   3'- guauaUUCGCGCGCuGU------------AGCGCGgGG- -5'
6507 5' -53.9 NC_001847.1 + 4385 0.74 0.606347
Target:  5'- ----cGAGCGCGCG-CGcCGCGgCCCa -3'
miRNA:   3'- guauaUUCGCGCGCuGUaGCGCgGGG- -5'
6507 5' -53.9 NC_001847.1 + 4428 0.66 0.944941
Target:  5'- ----cGAGCGCGCGccGCAgggaaaCGCGCaCgCCg -3'
miRNA:   3'- guauaUUCGCGCGC--UGUa-----GCGCG-G-GG- -5'
6507 5' -53.9 NC_001847.1 + 4448 0.71 0.769555
Target:  5'- -----cGGCGCacuccGCGACGUCcgcguccucgGCGCCCCc -3'
miRNA:   3'- guauauUCGCG-----CGCUGUAG----------CGCGGGG- -5'
6507 5' -53.9 NC_001847.1 + 4816 0.66 0.944941
Target:  5'- ----gAGGCGCGCGaugcccuugaGCGUgGgGCCgCCg -3'
miRNA:   3'- guauaUUCGCGCGC----------UGUAgCgCGG-GG- -5'
6507 5' -53.9 NC_001847.1 + 4924 0.7 0.797721
Target:  5'- ------cGCGCcgGCGGCAacaGCGCCCCc -3'
miRNA:   3'- guauauuCGCG--CGCUGUag-CGCGGGG- -5'
6507 5' -53.9 NC_001847.1 + 5081 0.69 0.8576
Target:  5'- ----gGAGCGgGCGGCAgugCGgCGCCUUc -3'
miRNA:   3'- guauaUUCGCgCGCUGUa--GC-GCGGGG- -5'
6507 5' -53.9 NC_001847.1 + 5199 0.66 0.940291
Target:  5'- ------cGCgaGCGCGGCAagCGCGCCgCg -3'
miRNA:   3'- guauauuCG--CGCGCUGUa-GCGCGGgG- -5'
6507 5' -53.9 NC_001847.1 + 5344 0.66 0.949348
Target:  5'- aCGUAguacuGGuCGCGCGGCGcggcCGgGCCCa -3'
miRNA:   3'- -GUAUau---UC-GCGCGCUGUa---GCgCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.