miRNA display CGI


Results 41 - 60 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6509 3' -62.1 NC_001847.1 + 75639 0.66 0.644534
Target:  5'- aCGGcGAuGCcgGAGCc-GGAGGCGCGGg -3'
miRNA:   3'- cGCCaCU-CG--CUCGucCCUCCGCGCCg -5'
6509 3' -62.1 NC_001847.1 + 31964 0.66 0.634661
Target:  5'- cGCGGcgcgcgGGGCGGGCcccGGGGCGCGaaGCc -3'
miRNA:   3'- -CGCCa-----CUCGCUCGuccCUCCGCGC--CG- -5'
6509 3' -62.1 NC_001847.1 + 110942 0.66 0.644534
Target:  5'- cGCGG--GGCGGGCGGGccgacGAGccucGCGgGGCu -3'
miRNA:   3'- -CGCCacUCGCUCGUCC-----CUC----CGCgCCG- -5'
6509 3' -62.1 NC_001847.1 + 128171 0.66 0.614916
Target:  5'- cCGGcaAGCugauGGCAGGG-GGCGgCGGCa -3'
miRNA:   3'- cGCCacUCGc---UCGUCCCuCCGC-GCCG- -5'
6509 3' -62.1 NC_001847.1 + 103299 0.66 0.585407
Target:  5'- aGCGGcG-GCG-GCGGGGcGGCcGCGcGCc -3'
miRNA:   3'- -CGCCaCuCGCuCGUCCCuCCG-CGC-CG- -5'
6509 3' -62.1 NC_001847.1 + 111277 0.66 0.59522
Target:  5'- gGCGGcgccGGGCcggGGGCGGcgcucggccGGGGGCGgGGCc -3'
miRNA:   3'- -CGCCa---CUCG---CUCGUC---------CCUCCGCgCCG- -5'
6509 3' -62.1 NC_001847.1 + 52519 0.66 0.594238
Target:  5'- cGCGGcc-GCGcGGCccGGGGgauggucgccggaGGGCGCGGCc -3'
miRNA:   3'- -CGCCacuCGC-UCG--UCCC-------------UCCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 66792 0.66 0.59522
Target:  5'- cCGGcguacgucUGGGCGucGGUAGGcGGGGCGCuGGUc -3'
miRNA:   3'- cGCC--------ACUCGC--UCGUCC-CUCCGCG-CCG- -5'
6509 3' -62.1 NC_001847.1 + 43443 0.66 0.624786
Target:  5'- cGCGGUgcccgaGAGCGaAGC-GGGAGcCGCaGCc -3'
miRNA:   3'- -CGCCA------CUCGC-UCGuCCCUCcGCGcCG- -5'
6509 3' -62.1 NC_001847.1 + 6658 0.66 0.634661
Target:  5'- cGUGGUGGauguaGAGCgAGGcuAGGcCGCGGCg -3'
miRNA:   3'- -CGCCACUcg---CUCG-UCCc-UCC-GCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 27385 0.66 0.614916
Target:  5'- cGCGcGauAGCGAGguugcuCGGGGGGGCGCuguugccgccGGCg -3'
miRNA:   3'- -CGC-CacUCGCUC------GUCCCUCCGCG----------CCG- -5'
6509 3' -62.1 NC_001847.1 + 107043 0.66 0.628735
Target:  5'- gGCGGUGucGCGcGCGgccccGGGcAGGCGCcacagcaccagaccgGGCa -3'
miRNA:   3'- -CGCCACu-CGCuCGU-----CCC-UCCGCG---------------CCG- -5'
6509 3' -62.1 NC_001847.1 + 77824 0.66 0.634661
Target:  5'- uGUGGUuGGCGGuGCAGGGcucacgAGcuCGCGGCc -3'
miRNA:   3'- -CGCCAcUCGCU-CGUCCC------UCc-GCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 35881 0.66 0.644534
Target:  5'- gGCGGcagcugGAGUcGGCGGcGGcGGCGUGGg -3'
miRNA:   3'- -CGCCa-----CUCGcUCGUC-CCuCCGCGCCg -5'
6509 3' -62.1 NC_001847.1 + 25358 0.66 0.614916
Target:  5'- cCGGcaAGCugauGGCAGGG-GGCGgCGGCa -3'
miRNA:   3'- cGCCacUCGc---UCGUCCCuCCGC-GCCG- -5'
6509 3' -62.1 NC_001847.1 + 14568 0.66 0.605059
Target:  5'- cGCGG-GuGCuGGCGGGc--GCGCGGCu -3'
miRNA:   3'- -CGCCaCuCGcUCGUCCcucCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 8129 0.66 0.644534
Target:  5'- cGCGG--GGCGGGCGGGccgacGAGccucGCGgGGCu -3'
miRNA:   3'- -CGCCacUCGCUCGUCC-----CUC----CGCgCCG- -5'
6509 3' -62.1 NC_001847.1 + 83917 0.66 0.642559
Target:  5'- aGCGGcGcgcccGCGAGCAGGGcccgcucgaaguGcGCGCGGg -3'
miRNA:   3'- -CGCCaCu----CGCUCGUCCCu-----------C-CGCGCCg -5'
6509 3' -62.1 NC_001847.1 + 22923 0.66 0.624786
Target:  5'- uGgGGUGGGCuGGGCuGGGcuGGGCuG-GGCu -3'
miRNA:   3'- -CgCCACUCG-CUCGuCCC--UCCG-CgCCG- -5'
6509 3' -62.1 NC_001847.1 + 25458 0.66 0.644534
Target:  5'- uGCaGGccGAGCGcgcGCAGGGuGGCGUacucGGUa -3'
miRNA:   3'- -CG-CCa-CUCGCu--CGUCCCuCCGCG----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.