miRNA display CGI


Results 41 - 60 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6509 3' -62.1 NC_001847.1 + 66 0.8 0.081674
Target:  5'- gGCGGgcggGGGCGGGguGGGggauGGGCGCGGa -3'
miRNA:   3'- -CGCCa---CUCGCUCguCCC----UCCGCGCCg -5'
6509 3' -62.1 NC_001847.1 + 130559 0.81 0.079599
Target:  5'- gGCGGauGGUGGGCGGGGAGGaCGCGGa -3'
miRNA:   3'- -CGCCacUCGCUCGUCCCUCC-GCGCCg -5'
6509 3' -62.1 NC_001847.1 + 43237 0.82 0.063067
Target:  5'- gGCGGUGGGgGcGCGcGGGcGGCGCGGCg -3'
miRNA:   3'- -CGCCACUCgCuCGU-CCCuCCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 100535 0.83 0.052553
Target:  5'- cGCGGagUGGGUGGGCGGGGAgccGGcCGCGGCg -3'
miRNA:   3'- -CGCC--ACUCGCUCGUCCCU---CC-GCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 108870 1.03 0.001986
Target:  5'- gGCGGUGAGCaAGCAGGGAGGCGCGGCa -3'
miRNA:   3'- -CGCCACUCGcUCGUCCCUCCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 84528 0.76 0.16938
Target:  5'- aGCGGUaugguuGGCGGGCGGGGcgGGGCGUGcGCc -3'
miRNA:   3'- -CGCCAc-----UCGCUCGUCCC--UCCGCGC-CG- -5'
6509 3' -62.1 NC_001847.1 + 103237 0.75 0.182207
Target:  5'- cGgGGcGGGCGGGCGGcGGcGGCGgCGGCa -3'
miRNA:   3'- -CgCCaCUCGCUCGUC-CCuCCGC-GCCG- -5'
6509 3' -62.1 NC_001847.1 + 31812 0.74 0.236804
Target:  5'- gGCGGUGGGCGGcGCGGGGgcAGaGUGCGa- -3'
miRNA:   3'- -CGCCACUCGCU-CGUCCC--UC-CGCGCcg -5'
6509 3' -62.1 NC_001847.1 + 59381 0.74 0.225947
Target:  5'- gGCGGccGGCaaaaaauacgGAGcCGGcGGAGGCGCGGCg -3'
miRNA:   3'- -CGCCacUCG----------CUC-GUC-CCUCCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 107879 0.74 0.225947
Target:  5'- aCGGacGGCGGGCcGGGAGcGgGCGGCa -3'
miRNA:   3'- cGCCacUCGCUCGuCCCUC-CgCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 54530 0.74 0.220678
Target:  5'- gGCGGggccguccggGGGCGcagacGGCGGGGGcGGCGCGGa -3'
miRNA:   3'- -CGCCa---------CUCGC-----UCGUCCCU-CCGCGCCg -5'
6509 3' -62.1 NC_001847.1 + 114908 0.74 0.219118
Target:  5'- cGCGG-GGGCGAGCcccuggggcacGGGGgcucgcguuuggcgGGGCGgGGCg -3'
miRNA:   3'- -CGCCaCUCGCUCG-----------UCCC--------------UCCGCgCCG- -5'
6509 3' -62.1 NC_001847.1 + 115689 0.74 0.215515
Target:  5'- cGCGGcgGAGCGgcuggcccGGCAGcGGGcGCGCGGCc -3'
miRNA:   3'- -CGCCa-CUCGC--------UCGUC-CCUcCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 126208 0.74 0.210455
Target:  5'- -gGGUGGGCGgagcucacuuGGCGGGGucgucGGCGgGGCg -3'
miRNA:   3'- cgCCACUCGC----------UCGUCCCu----CCGCgCCG- -5'
6509 3' -62.1 NC_001847.1 + 121189 0.75 0.205498
Target:  5'- uGCGG-GAGCGGcacuugcGCGGGGcggccccccugccgcGGCGCGGCa -3'
miRNA:   3'- -CGCCaCUCGCU-------CGUCCCu--------------CCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 134515 0.75 0.200642
Target:  5'- uCGG-GGGCGGG--GGGAGGCGCGGg -3'
miRNA:   3'- cGCCaCUCGCUCguCCCUCCGCGCCg -5'
6509 3' -62.1 NC_001847.1 + 109652 0.75 0.200642
Target:  5'- aGCGGgGAGUu-GgGGGGGGGgGCGGCg -3'
miRNA:   3'- -CGCCaCUCGcuCgUCCCUCCgCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 77109 0.75 0.19123
Target:  5'- cGCGGU-AGCG-GCGGGGcugcuucaAGGCGCGcGCg -3'
miRNA:   3'- -CGCCAcUCGCuCGUCCC--------UCCGCGC-CG- -5'
6509 3' -62.1 NC_001847.1 + 87888 0.75 0.189852
Target:  5'- cGCGGcuuucUGGGCGgggcuuugcacaggGGCGGGGcguggggcuGGGCGCGGCc -3'
miRNA:   3'- -CGCC-----ACUCGC--------------UCGUCCC---------UCCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 121362 0.75 0.18667
Target:  5'- cGCGGcGGGCGGGguGGGgagcGGGCaaGGCg -3'
miRNA:   3'- -CGCCaCUCGCUCguCCC----UCCGcgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.