Results 21 - 40 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6509 | 5' | -57.3 | NC_001847.1 | + | 113262 | 0.67 | 0.781617 |
Target: 5'- gCGGGCUCg---GCCUcggcagcgcgccgcaGCCCCCgcaCCaCCu -3' miRNA: 3'- -GUCCGAGuaaaCGGA---------------UGGGGGa--GG-GG- -5' |
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6509 | 5' | -57.3 | NC_001847.1 | + | 117044 | 0.67 | 0.775089 |
Target: 5'- gGGGCUCGccgaggaggcggaaGCCUcGCCcucgccuccgCCCUCCCCg -3' miRNA: 3'- gUCCGAGUaaa-----------CGGA-UGG----------GGGAGGGG- -5' |
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6509 | 5' | -57.3 | NC_001847.1 | + | 130269 | 0.67 | 0.768499 |
Target: 5'- gGGGCcCugccgcUGCCcgccgcccccCCCCCUCCCCu -3' miRNA: 3'- gUCCGaGuaa---ACGGau--------GGGGGAGGGG- -5' |
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6509 | 5' | -57.3 | NC_001847.1 | + | 27456 | 0.67 | 0.768499 |
Target: 5'- gGGGCcCugccgcUGCCcgccgcccccCCCCCUCCCCu -3' miRNA: 3'- gUCCGaGuaa---ACGGau--------GGGGGAGGGG- -5' |
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6509 | 5' | -57.3 | NC_001847.1 | + | 32459 | 0.67 | 0.768499 |
Target: 5'- -cGGCgc-----CCUGCCCCCgCCCCg -3' miRNA: 3'- guCCGaguaaacGGAUGGGGGaGGGG- -5' |
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6509 | 5' | -57.3 | NC_001847.1 | + | 16462 | 0.67 | 0.768499 |
Target: 5'- gGGGCUgCGgcccgGCCcaACCCCCgCCCUg -3' miRNA: 3'- gUCCGA-GUaaa--CGGa-UGGGGGaGGGG- -5' |
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6509 | 5' | -57.3 | NC_001847.1 | + | 91649 | 0.67 | 0.768499 |
Target: 5'- -cGGCUC--UUGCUUcGCCCUCUCUCg -3' miRNA: 3'- guCCGAGuaAACGGA-UGGGGGAGGGg -5' |
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6509 | 5' | -57.3 | NC_001847.1 | + | 102344 | 0.67 | 0.758981 |
Target: 5'- -cGGCUCcaacgcGCCguccGCCCCCggcccUCCCCc -3' miRNA: 3'- guCCGAGuaaa--CGGa---UGGGGG-----AGGGG- -5' |
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6509 | 5' | -57.3 | NC_001847.1 | + | 50887 | 0.67 | 0.758981 |
Target: 5'- -cGGCguuuuUUUGuCCUcgccGCCCuCCUCCCCc -3' miRNA: 3'- guCCGagu--AAAC-GGA----UGGG-GGAGGGG- -5' |
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6509 | 5' | -57.3 | NC_001847.1 | + | 92509 | 0.67 | 0.758981 |
Target: 5'- aGGGCacgacgUCGgcgcUGCCgcCCCCCUCCgCg -3' miRNA: 3'- gUCCG------AGUaa--ACGGauGGGGGAGGgG- -5' |
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6509 | 5' | -57.3 | NC_001847.1 | + | 123507 | 0.67 | 0.749349 |
Target: 5'- aAGGCUCcaucgUGUCcAUCCCCaUCCUCg -3' miRNA: 3'- gUCCGAGuaa--ACGGaUGGGGG-AGGGG- -5' |
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6509 | 5' | -57.3 | NC_001847.1 | + | 15971 | 0.67 | 0.749349 |
Target: 5'- -cGGUccCA--UGCCUGCCCCgCcgCCCCg -3' miRNA: 3'- guCCGa-GUaaACGGAUGGGG-Ga-GGGG- -5' |
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6509 | 5' | -57.3 | NC_001847.1 | + | 121265 | 0.67 | 0.749349 |
Target: 5'- uGGGCUCccg-GCCaaaggcGCCCCC-CCUCg -3' miRNA: 3'- gUCCGAGuaaaCGGa-----UGGGGGaGGGG- -5' |
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6509 | 5' | -57.3 | NC_001847.1 | + | 120022 | 0.68 | 0.739614 |
Target: 5'- cCGGGUgagcg-GCCUAggCCCUCCCCc -3' miRNA: 3'- -GUCCGaguaaaCGGAUggGGGAGGGG- -5' |
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6509 | 5' | -57.3 | NC_001847.1 | + | 10427 | 0.68 | 0.739614 |
Target: 5'- -cGGUUCGcgcUGCC-GCCCCCgcgcccggcUCCCCu -3' miRNA: 3'- guCCGAGUaa-ACGGaUGGGGG---------AGGGG- -5' |
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6509 | 5' | -57.3 | NC_001847.1 | + | 123893 | 0.68 | 0.729784 |
Target: 5'- gGGGCcCGacUGUCcccuucCCCCCUCCCCc -3' miRNA: 3'- gUCCGaGUaaACGGau----GGGGGAGGGG- -5' |
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6509 | 5' | -57.3 | NC_001847.1 | + | 21080 | 0.68 | 0.729784 |
Target: 5'- gGGGCcCGacUGUCcccuucCCCCCUCCCCc -3' miRNA: 3'- gUCCGaGUaaACGGau----GGGGGAGGGG- -5' |
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6509 | 5' | -57.3 | NC_001847.1 | + | 13764 | 0.68 | 0.729784 |
Target: 5'- -cGGUcuUCcuccGCCUugCCCgCUCCCCa -3' miRNA: 3'- guCCG--AGuaaaCGGAugGGG-GAGGGG- -5' |
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6509 | 5' | -57.3 | NC_001847.1 | + | 80696 | 0.68 | 0.728797 |
Target: 5'- uCGGGCUCGUcc-CCgcCCCCCUCgucucugCCCg -3' miRNA: 3'- -GUCCGAGUAaacGGauGGGGGAG-------GGG- -5' |
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6509 | 5' | -57.3 | NC_001847.1 | + | 134870 | 0.68 | 0.71987 |
Target: 5'- gCGGGCUCg---GCg-GCCCCCgggcucgggCCCCu -3' miRNA: 3'- -GUCCGAGuaaaCGgaUGGGGGa--------GGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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