miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
651 5' -52.4 AC_000017.1 + 15285 0.71 0.418933
Target:  5'- uCCGcAGcGGggGCgGCAGCUucgGCCGCUGc -3'
miRNA:   3'- -GGU-UUuUCuuCGaCGUCGA---CGGCGGC- -5'
651 5' -52.4 AC_000017.1 + 16409 0.68 0.594392
Target:  5'- gCCGc--GGcuGCUGCGGCgGCCGCuCGu -3'
miRNA:   3'- -GGUuuuUCuuCGACGUCGaCGGCG-GC- -5'
651 5' -52.4 AC_000017.1 + 17371 0.71 0.449624
Target:  5'- uCCGuAGAGGuuuuggacgcGGCcGCAGCgGCCGCCu -3'
miRNA:   3'- -GGUuUUUCU----------UCGaCGUCGaCGGCGGc -5'
651 5' -52.4 AC_000017.1 + 18802 0.71 0.418933
Target:  5'- gCCA--GAGGAGCUGCugAGUcGCCGCgCGc -3'
miRNA:   3'- -GGUuuUUCUUCGACG--UCGaCGGCG-GC- -5'
651 5' -52.4 AC_000017.1 + 21729 0.74 0.299428
Target:  5'- aCAuAAAGAAGCaagcaacaucaacaaCAGCUGCCGCCa -3'
miRNA:   3'- gGUuUUUCUUCGac-------------GUCGACGGCGGc -5'
651 5' -52.4 AC_000017.1 + 24996 0.67 0.64923
Target:  5'- aCCGAGGAGGgccuacccgcaguuGGCgaugaGCAGCUGgCgCGCUGg -3'
miRNA:   3'- -GGUUUUUCU--------------UCGa----CGUCGAC-G-GCGGC- -5'
651 5' -52.4 AC_000017.1 + 25420 0.76 0.217624
Target:  5'- aCCu-GAAGGAGCUGCAGaaGCUGCUa -3'
miRNA:   3'- -GGuuUUUCUUCGACGUCgaCGGCGGc -5'
651 5' -52.4 AC_000017.1 + 26232 1.11 0.000782
Target:  5'- cCCAAAAAGAAGCUGCAGCUGCCGCCGc -3'
miRNA:   3'- -GGUUUUUCUUCGACGUCGACGGCGGC- -5'
651 5' -52.4 AC_000017.1 + 26265 0.75 0.271237
Target:  5'- gCCAuccuGGGAAGCaagggcccGCGGCUGCUGCUGa -3'
miRNA:   3'- -GGUuu--UUCUUCGa-------CGUCGACGGCGGC- -5'
651 5' -52.4 AC_000017.1 + 26532 0.7 0.481515
Target:  5'- aCCAGGGccGGuAAGUccaaGCAGCcGCCGCCGu -3'
miRNA:   3'- -GGUUUU--UC-UUCGa---CGUCGaCGGCGGC- -5'
651 5' -52.4 AC_000017.1 + 26818 0.76 0.205718
Target:  5'- gCCGcugcuGuuGCUGCcGCUGCCGCCGg -3'
miRNA:   3'- -GGUuuuu-CuuCGACGuCGACGGCGGC- -5'
651 5' -52.4 AC_000017.1 + 26854 0.67 0.65273
Target:  5'- gCAGGAGGAGgagcGCUGCGuCUGgCGCCc -3'
miRNA:   3'- gGUUUUUCUU----CGACGUcGACgGCGGc -5'
651 5' -52.4 AC_000017.1 + 26914 0.68 0.582788
Target:  5'- gCCAGAcgc-AGCgcuccuccuccUGCuGCUGCCGCCGc -3'
miRNA:   3'- -GGUUUuucuUCG-----------ACGuCGACGGCGGC- -5'
651 5' -52.4 AC_000017.1 + 28846 0.66 0.755264
Target:  5'- aCCuguuuGGcAGCacUGCAGaCUGCCGCUa -3'
miRNA:   3'- -GGuuuu-UCuUCG--ACGUC-GACGGCGGc -5'
651 5' -52.4 AC_000017.1 + 29210 0.72 0.389547
Target:  5'- -aGAAAAGAAaauGCcuuaGCAuGCUGCCGCCGc -3'
miRNA:   3'- ggUUUUUCUU---CGa---CGU-CGACGGCGGC- -5'
651 5' -52.4 AC_000017.1 + 33249 0.66 0.737588
Target:  5'- aUCAGGAuaGGGcggugguGCUGCAGCagcgcgcgaauaaacUGCUGCCGc -3'
miRNA:   3'- -GGUUUU--UCUu------CGACGUCG---------------ACGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.