Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
651 | 5' | -52.4 | AC_000017.1 | + | 11174 | 0.67 | 0.675999 |
Target: 5'- -gGAGAAGggGagggugccCUGCAuGuCUGCCGCUGc -3' miRNA: 3'- ggUUUUUCuuC--------GACGU-C-GACGGCGGC- -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 11118 | 0.67 | 0.675999 |
Target: 5'- -aGGAGGGggGC-GCAuCUGCCGCa- -3' miRNA: 3'- ggUUUUUCuuCGaCGUcGACGGCGgc -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 12771 | 0.66 | 0.721869 |
Target: 5'- aCCAugGAGcccAGGUUGCccuGCUGCUGCgCGc -3' miRNA: 3'- -GGUuuUUC---UUCGACGu--CGACGGCG-GC- -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 2260 | 0.66 | 0.721869 |
Target: 5'- uCCAu--GGGcuCUGCucCUGCCGCCGc -3' miRNA: 3'- -GGUuuuUCUucGACGucGACGGCGGC- -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 9953 | 0.66 | 0.744256 |
Target: 5'- gUCAAAAcGAAGcCUGgGGCaugGCCGaCCGc -3' miRNA: 3'- -GGUUUUuCUUC-GACgUCGa--CGGC-GGC- -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 5555 | 0.68 | 0.594392 |
Target: 5'- uCCAAGGGcAAGCUGCGcGCcaagggccaUGCCGCgGa -3' miRNA: 3'- -GGUUUUUcUUCGACGU-CG---------ACGGCGgC- -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 16409 | 0.68 | 0.594392 |
Target: 5'- gCCGc--GGcuGCUGCGGCgGCCGCuCGu -3' miRNA: 3'- -GGUuuuUCuuCGACGUCGaCGGCG-GC- -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 26914 | 0.68 | 0.582788 |
Target: 5'- gCCAGAcgc-AGCgcuccuccuccUGCuGCUGCCGCCGc -3' miRNA: 3'- -GGUUUuucuUCG-----------ACGuCGACGGCGGC- -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 13690 | 0.69 | 0.57123 |
Target: 5'- gCCugc-GGAAGCUuuccuuucGCAGC-GCCGCCu -3' miRNA: 3'- -GGuuuuUCUUCGA--------CGUCGaCGGCGGc -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 17371 | 0.71 | 0.449624 |
Target: 5'- uCCGuAGAGGuuuuggacgcGGCcGCAGCgGCCGCCu -3' miRNA: 3'- -GGUuUUUCU----------UCGaCGUCGaCGGCGGc -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 15285 | 0.71 | 0.418933 |
Target: 5'- uCCGcAGcGGggGCgGCAGCUucgGCCGCUGc -3' miRNA: 3'- -GGU-UUuUCuuCGaCGUCGA---CGGCGGC- -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 26265 | 0.75 | 0.271237 |
Target: 5'- gCCAuccuGGGAAGCaagggcccGCGGCUGCUGCUGa -3' miRNA: 3'- -GGUuu--UUCUUCGa-------CGUCGACGGCGGC- -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 12516 | 0.76 | 0.217624 |
Target: 5'- gCGGAGAGccgguuGGcCUGUGGCUGCUGCCGg -3' miRNA: 3'- gGUUUUUCu-----UC-GACGUCGACGGCGGC- -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 26818 | 0.76 | 0.205718 |
Target: 5'- gCCGcugcuGuuGCUGCcGCUGCCGCCGg -3' miRNA: 3'- -GGUuuuu-CuuCGACGuCGACGGCGGC- -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 10857 | 0.77 | 0.1784 |
Target: 5'- gCCAAAAA-AAGCUagcGCAGCaGCCGCCGc -3' miRNA: 3'- -GGUUUUUcUUCGA---CGUCGaCGGCGGC- -5' |
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651 | 5' | -52.4 | AC_000017.1 | + | 28846 | 0.66 | 0.755264 |
Target: 5'- aCCuguuuGGcAGCacUGCAGaCUGCCGCUa -3' miRNA: 3'- -GGuuuu-UCuUCG--ACGUC-GACGGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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