miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
651 5' -52.4 AC_000017.1 + 26232 1.11 0.000782
Target:  5'- cCCAAAAAGAAGCUGCAGCUGCCGCCGc -3'
miRNA:   3'- -GGUUUUUCUUCGACGUCGACGGCGGC- -5'
651 5' -52.4 AC_000017.1 + 10857 0.77 0.1784
Target:  5'- gCCAAAAA-AAGCUagcGCAGCaGCCGCCGc -3'
miRNA:   3'- -GGUUUUUcUUCGA---CGUCGaCGGCGGC- -5'
651 5' -52.4 AC_000017.1 + 26818 0.76 0.205718
Target:  5'- gCCGcugcuGuuGCUGCcGCUGCCGCCGg -3'
miRNA:   3'- -GGUuuuu-CuuCGACGuCGACGGCGGC- -5'
651 5' -52.4 AC_000017.1 + 12516 0.76 0.217624
Target:  5'- gCGGAGAGccgguuGGcCUGUGGCUGCUGCCGg -3'
miRNA:   3'- gGUUUUUCu-----UC-GACGUCGACGGCGGC- -5'
651 5' -52.4 AC_000017.1 + 25420 0.76 0.217624
Target:  5'- aCCu-GAAGGAGCUGCAGaaGCUGCUa -3'
miRNA:   3'- -GGuuUUUCUUCGACGUCgaCGGCGGc -5'
651 5' -52.4 AC_000017.1 + 26265 0.75 0.271237
Target:  5'- gCCAuccuGGGAAGCaagggcccGCGGCUGCUGCUGa -3'
miRNA:   3'- -GGUuu--UUCUUCGa-------CGUCGACGGCGGC- -5'
651 5' -52.4 AC_000017.1 + 21729 0.74 0.299428
Target:  5'- aCAuAAAGAAGCaagcaacaucaacaaCAGCUGCCGCCa -3'
miRNA:   3'- gGUuUUUCUUCGac-------------GUCGACGGCGGc -5'
651 5' -52.4 AC_000017.1 + 3782 0.73 0.326438
Target:  5'- gCCGuu--GGAGaCUGCAGCcuccGCCGCCGc -3'
miRNA:   3'- -GGUuuuuCUUC-GACGUCGa---CGGCGGC- -5'
651 5' -52.4 AC_000017.1 + 15192 0.72 0.365196
Target:  5'- gCgGAGGAGAAGCgcgcugagGCcgaggcagcggccgaAGCUGCCGCCc -3'
miRNA:   3'- -GgUUUUUCUUCGa-------CG---------------UCGACGGCGGc -5'
651 5' -52.4 AC_000017.1 + 29210 0.72 0.389547
Target:  5'- -aGAAAAGAAaauGCcuuaGCAuGCUGCCGCCGc -3'
miRNA:   3'- ggUUUUUCUU---CGa---CGU-CGACGGCGGC- -5'
651 5' -52.4 AC_000017.1 + 18802 0.71 0.418933
Target:  5'- gCCA--GAGGAGCUGCugAGUcGCCGCgCGc -3'
miRNA:   3'- -GGUuuUUCUUCGACG--UCGaCGGCG-GC- -5'
651 5' -52.4 AC_000017.1 + 15285 0.71 0.418933
Target:  5'- uCCGcAGcGGggGCgGCAGCUucgGCCGCUGc -3'
miRNA:   3'- -GGU-UUuUCuuCGaCGUCGA---CGGCGGC- -5'
651 5' -52.4 AC_000017.1 + 1970 0.71 0.439255
Target:  5'- aCCGGGgcGc-GCUGCGGCUGCUGuuGc -3'
miRNA:   3'- -GGUUUuuCuuCGACGUCGACGGCggC- -5'
651 5' -52.4 AC_000017.1 + 2179 0.71 0.449624
Target:  5'- gCAGGAGGAAGCcagGCGGCgGCgGCgGc -3'
miRNA:   3'- gGUUUUUCUUCGa--CGUCGaCGgCGgC- -5'
651 5' -52.4 AC_000017.1 + 17371 0.71 0.449624
Target:  5'- uCCGuAGAGGuuuuggacgcGGCcGCAGCgGCCGCCu -3'
miRNA:   3'- -GGUuUUUCU----------UCGaCGUCGaCGGCGGc -5'
651 5' -52.4 AC_000017.1 + 8674 0.7 0.47076
Target:  5'- gCGGGcAGGAGCUGguGCUG-CGCaCGg -3'
miRNA:   3'- gGUUUuUCUUCGACguCGACgGCG-GC- -5'
651 5' -52.4 AC_000017.1 + 26532 0.7 0.481515
Target:  5'- aCCAGGGccGGuAAGUccaaGCAGCcGCCGCCGu -3'
miRNA:   3'- -GGUUUU--UC-UUCGa---CGUCGaCGGCGGC- -5'
651 5' -52.4 AC_000017.1 + 4973 0.7 0.514464
Target:  5'- --uAAGAG-AGCUGCAGCUG-CGUCa -3'
miRNA:   3'- gguUUUUCuUCGACGUCGACgGCGGc -5'
651 5' -52.4 AC_000017.1 + 10343 0.69 0.525652
Target:  5'- aCCAAAAAGu-GCgGCGGCgGCUGgCGg -3'
miRNA:   3'- -GGUUUUUCuuCGaCGUCGaCGGCgGC- -5'
651 5' -52.4 AC_000017.1 + 13690 0.69 0.57123
Target:  5'- gCCugc-GGAAGCUuuccuuucGCAGC-GCCGCCu -3'
miRNA:   3'- -GGuuuuUCUUCGA--------CGUCGaCGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.