miRNA display CGI


Results 41 - 60 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 34014 0.66 0.699804
Target:  5'- gGCGGUGcugGGCAccgcGCuGGGccAGGCgaugggccccGCGGCg -3'
miRNA:   3'- -CGCCAC---UCGUu---CGuCCC--UCCG----------CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 18003 0.66 0.699804
Target:  5'- aGCGucgGGGCuguuGGGCGuGGGGGGCGuuGCg -3'
miRNA:   3'- -CGCca-CUCG----UUCGU-CCCUCCGCgcCG- -5'
6510 3' -60.3 NC_001847.1 + 53611 0.66 0.689921
Target:  5'- aCGGUG-GCGGGCGGc--GGgGUGGCa -3'
miRNA:   3'- cGCCACuCGUUCGUCccuCCgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 87996 0.66 0.709633
Target:  5'- uGCGGc---CGGGCccGaGGGGCGCGGCg -3'
miRNA:   3'- -CGCCacucGUUCGucC-CUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 117502 0.66 0.710613
Target:  5'- aGCGcGUGGGCAGGUuccgcuccacGCGCGGCg -3'
miRNA:   3'- -CGC-CACUCGUUCGucccuc----CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 55438 0.66 0.719398
Target:  5'- cGCGGUccugcAGCGccuGGCGccGGcGGGGCGCGcGCc -3'
miRNA:   3'- -CGCCAc----UCGU---UCGU--CC-CUCCGCGC-CG- -5'
6510 3' -60.3 NC_001847.1 + 64691 0.66 0.719398
Target:  5'- cGCGcGUGucGCAGuGC-GucAGGCGCGGCa -3'
miRNA:   3'- -CGC-CACu-CGUU-CGuCccUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 62434 0.66 0.679991
Target:  5'- -aGGUGAGCGuGUuuucGucGGCGCGGCu -3'
miRNA:   3'- cgCCACUCGUuCGuc--CcuCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 56315 0.66 0.707672
Target:  5'- cGCGGcGGGCGcgcgaaggccguaaaGGCgaAGGGguccacaugcuccgcGGGCGCGGg -3'
miRNA:   3'- -CGCCaCUCGU---------------UCG--UCCC---------------UCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 102849 0.66 0.709633
Target:  5'- cCGGggGGGUguuuuuGGGgGGGGGcggaaauuucGGCGCGGCg -3'
miRNA:   3'- cGCCa-CUCG------UUCgUCCCU----------CCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 39405 0.66 0.719398
Target:  5'- cCGGccGGGCuccuccgaAAGCagcgAGGGGGGCGCgugGGCg -3'
miRNA:   3'- cGCCa-CUCG--------UUCG----UCCCUCCGCG---CCG- -5'
6510 3' -60.3 NC_001847.1 + 81244 0.66 0.699804
Target:  5'- gGCGGggccgucGCGAGgAcGGGGGGCccgcccgcccccGCGGCg -3'
miRNA:   3'- -CGCCacu----CGUUCgU-CCCUCCG------------CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 50829 0.66 0.689921
Target:  5'- aCGGggGGGCGcugcccgcGCcGGGGGGCGCuGGUg -3'
miRNA:   3'- cGCCa-CUCGUu-------CGuCCCUCCGCG-CCG- -5'
6510 3' -60.3 NC_001847.1 + 32315 0.66 0.719398
Target:  5'- cCGG--GGUc-GCAGGGGGcccGCGCGGCg -3'
miRNA:   3'- cGCCacUCGuuCGUCCCUC---CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 51054 0.66 0.709633
Target:  5'- aCGGUcGAGCAGGCcaccGAGGCGUucgugcgcgGGCu -3'
miRNA:   3'- cGCCA-CUCGUUCGucc-CUCCGCG---------CCG- -5'
6510 3' -60.3 NC_001847.1 + 71070 0.66 0.670024
Target:  5'- cCGGUGcuGGCGGcGCucGGccGGCGCGGCc -3'
miRNA:   3'- cGCCAC--UCGUU-CGucCCu-CCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 40377 0.66 0.709633
Target:  5'- aGCGG-----AAGCGGGG-GGCGaCGGCc -3'
miRNA:   3'- -CGCCacucgUUCGUCCCuCCGC-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 71518 0.66 0.698818
Target:  5'- cGCGGa-GGCAguAGCGGGcgaagggguagcaGAGGCacGCGGCc -3'
miRNA:   3'- -CGCCacUCGU--UCGUCC-------------CUCCG--CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 69295 0.66 0.689921
Target:  5'- cGCGGgcguGCGGGCGGaccGGcugccuuuuGGGCGCGGg -3'
miRNA:   3'- -CGCCacu-CGUUCGUC---CC---------UCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 135128 0.66 0.719398
Target:  5'- cCGG--GGUc-GCAGGGGGcccGCGCGGCg -3'
miRNA:   3'- cGCCacUCGuuCGUCCCUC---CGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.