miRNA display CGI


Results 81 - 100 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 102060 0.67 0.650008
Target:  5'- gGCGuGUucGGC-AGCaAGGGcAGGCGCGGg -3'
miRNA:   3'- -CGC-CAc-UCGuUCG-UCCC-UCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 124904 0.67 0.639976
Target:  5'- aGCGGgcccGGCAGGCGcgccGGGGGCGacagcgGGCg -3'
miRNA:   3'- -CGCCac--UCGUUCGUc---CCUCCGCg-----CCG- -5'
6510 3' -60.3 NC_001847.1 + 104074 0.67 0.639976
Target:  5'- aGCGGcgcgccGAGCccccAGCGGuuGGcGGCGCGGUg -3'
miRNA:   3'- -CGCCa-----CUCGu---UCGUC--CCuCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 11782 0.67 0.639976
Target:  5'- -gGGcGGGCGGGCAGuGGcgcuuucgacccGGcGCGUGGCg -3'
miRNA:   3'- cgCCaCUCGUUCGUC-CC------------UC-CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 13114 0.67 0.619901
Target:  5'- cGCGGccgGGGCGcGC-GGGcGGCGCcGCg -3'
miRNA:   3'- -CGCCa--CUCGUuCGuCCCuCCGCGcCG- -5'
6510 3' -60.3 NC_001847.1 + 22486 0.67 0.629938
Target:  5'- gGgGGUGAGaagGAGgAGGaaAGGCGgGGCg -3'
miRNA:   3'- -CgCCACUCg--UUCgUCCc-UCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 11348 0.67 0.599862
Target:  5'- aGCGG-GAGCAcucguacGCGcGGccGCGCGGCg -3'
miRNA:   3'- -CGCCaCUCGUu------CGUcCCucCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 125775 0.67 0.629938
Target:  5'- uGgGGUGGGCuGGGCuGGGcugGGGUG-GGCu -3'
miRNA:   3'- -CgCCACUCG-UUCGuCCC---UCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 13692 0.67 0.598862
Target:  5'- cGCGGUccacgcuGAGC--GCcGGGAcGUGCGGCa -3'
miRNA:   3'- -CGCCA-------CUCGuuCGuCCCUcCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 125385 0.67 0.598862
Target:  5'- aGCGGUaAGCGGGCgccccGGGGcAGggcccgcccggucGCGUGGCa -3'
miRNA:   3'- -CGCCAcUCGUUCG-----UCCC-UC-------------CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 35881 0.67 0.599862
Target:  5'- gGCGGcagcugGAGUcGGCGGcGGcGGCGUGGg -3'
miRNA:   3'- -CGCCa-----CUCGuUCGUC-CCuCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 78344 0.67 0.609873
Target:  5'- cGCGccggccccGUGAGCGcgacgaacGGCGGGcGGGCaaucGCGGCg -3'
miRNA:   3'- -CGC--------CACUCGU--------UCGUCCcUCCG----CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 110234 0.67 0.619901
Target:  5'- aUGGggGGGgGGGgGGGGGGGCguacuugcaGCGGCc -3'
miRNA:   3'- cGCCa-CUCgUUCgUCCCUCCG---------CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 59353 0.67 0.619901
Target:  5'- uCGG-GGGCgGAGCGGcGGcGGCaGCGGCn -3'
miRNA:   3'- cGCCaCUCG-UUCGUC-CCuCCG-CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 36162 0.67 0.629938
Target:  5'- aGCGGcu-GCAGGCAacgcuugcGGcGGuGCGCGGCg -3'
miRNA:   3'- -CGCCacuCGUUCGU--------CCcUC-CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 71149 0.67 0.629938
Target:  5'- cCGGcGAGCAggAGCucgcGGAccaGGUGCGGCa -3'
miRNA:   3'- cGCCaCUCGU--UCGuc--CCU---CCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 33134 0.67 0.629938
Target:  5'- gGCGGcGAGCGcuuccGCGuGGcGA-GCGCGGCg -3'
miRNA:   3'- -CGCCaCUCGUu----CGU-CC-CUcCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 85342 0.67 0.638972
Target:  5'- cGCGcccAGC-AGCAGcgcacccGGGGGCGUGGCa -3'
miRNA:   3'- -CGCcacUCGuUCGUC-------CCUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 81211 0.67 0.639976
Target:  5'- cGCGcGUaGAuGCAGGCucGGcGGCaGCGGCg -3'
miRNA:   3'- -CGC-CA-CU-CGUUCGucCCuCCG-CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 128721 0.67 0.619901
Target:  5'- uGCGGgGuGCGAGgGGGaGGGgGUGGUg -3'
miRNA:   3'- -CGCCaCuCGUUCgUCCcUCCgCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.