Results 101 - 120 of 429 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6510 | 3' | -60.3 | NC_001847.1 | + | 110234 | 0.67 | 0.619901 |
Target: 5'- aUGGggGGGgGGGgGGGGGGGCguacuugcaGCGGCc -3' miRNA: 3'- cGCCa-CUCgUUCgUCCCUCCG---------CGCCG- -5' |
|||||||
6510 | 3' | -60.3 | NC_001847.1 | + | 85342 | 0.67 | 0.638972 |
Target: 5'- cGCGcccAGC-AGCAGcgcacccGGGGGCGUGGCa -3' miRNA: 3'- -CGCcacUCGuUCGUC-------CCUCCGCGCCG- -5' |
|||||||
6510 | 3' | -60.3 | NC_001847.1 | + | 81211 | 0.67 | 0.639976 |
Target: 5'- cGCGcGUaGAuGCAGGCucGGcGGCaGCGGCg -3' miRNA: 3'- -CGC-CA-CU-CGUUCGucCCuCCG-CGCCG- -5' |
|||||||
6510 | 3' | -60.3 | NC_001847.1 | + | 11782 | 0.67 | 0.639976 |
Target: 5'- -gGGcGGGCGGGCAGuGGcgcuuucgacccGGcGCGUGGCg -3' miRNA: 3'- cgCCaCUCGUUCGUC-CC------------UC-CGCGCCG- -5' |
|||||||
6510 | 3' | -60.3 | NC_001847.1 | + | 10841 | 0.67 | 0.599862 |
Target: 5'- cGCGcGacGGCGGcGCGuGGccGAGGCGCGGCg -3' miRNA: 3'- -CGC-CacUCGUU-CGU-CC--CUCCGCGCCG- -5' |
|||||||
6510 | 3' | -60.3 | NC_001847.1 | + | 59813 | 0.67 | 0.606868 |
Target: 5'- gGCGGUcgaGAGCAgcguuugcgccagcGccucGCGGGGcaccggccAGGCGCGGUc -3' miRNA: 3'- -CGCCA---CUCGU--------------U----CGUCCC--------UCCGCGCCG- -5' |
|||||||
6510 | 3' | -60.3 | NC_001847.1 | + | 1915 | 0.67 | 0.609873 |
Target: 5'- uGCGG--GGCAGGUGGcGAGGCuuagccggcgcGCGGCg -3' miRNA: 3'- -CGCCacUCGUUCGUCcCUCCG-----------CGCCG- -5' |
|||||||
6510 | 3' | -60.3 | NC_001847.1 | + | 43119 | 0.67 | 0.609873 |
Target: 5'- gGCGGUGcccGCAgacGGCGcGGGcccgcGGGCGCuGCg -3' miRNA: 3'- -CGCCACu--CGU---UCGU-CCC-----UCCGCGcCG- -5' |
|||||||
6510 | 3' | -60.3 | NC_001847.1 | + | 124700 | 0.67 | 0.609873 |
Target: 5'- cGCGGUGGGCGacgAGacgaAGGagacggccGAGGCcGCGGg -3' miRNA: 3'- -CGCCACUCGU---UCg---UCC--------CUCCG-CGCCg -5' |
|||||||
6510 | 3' | -60.3 | NC_001847.1 | + | 30909 | 0.67 | 0.609873 |
Target: 5'- cCGGUGAgGCGcGCGccGGcGGUGCGGCg -3' miRNA: 3'- cGCCACU-CGUuCGUc-CCuCCGCGCCG- -5' |
|||||||
6510 | 3' | -60.3 | NC_001847.1 | + | 54577 | 0.67 | 0.609873 |
Target: 5'- aCGGccccGCGGGCuGGGcGGCGCuGGCg -3' miRNA: 3'- cGCCacu-CGUUCGuCCCuCCGCG-CCG- -5' |
|||||||
6510 | 3' | -60.3 | NC_001847.1 | + | 75772 | 0.67 | 0.609873 |
Target: 5'- cGCgGGUGAaCAcGGCcgcGGGcucGGCGCGGCg -3' miRNA: 3'- -CG-CCACUcGU-UCGu--CCCu--CCGCGCCG- -5' |
|||||||
6510 | 3' | -60.3 | NC_001847.1 | + | 9510 | 0.67 | 0.650008 |
Target: 5'- aGCGGacccGAGcCGAGC-GGGcGGCGCGcuaGCg -3' miRNA: 3'- -CGCCa---CUC-GUUCGuCCCuCCGCGC---CG- -5' |
|||||||
6510 | 3' | -60.3 | NC_001847.1 | + | 10134 | 0.67 | 0.649006 |
Target: 5'- aGCGGgcccGGccguagcGCGAGCGGGaGGGcuuuuucgacgcGCGCGGCu -3' miRNA: 3'- -CGCCa---CU-------CGUUCGUCC-CUC------------CGCGCCG- -5' |
|||||||
6510 | 3' | -60.3 | NC_001847.1 | + | 127145 | 0.67 | 0.639976 |
Target: 5'- cGCGG-GGGCGAuGUccaAGuGGAGGgGgGGCc -3' miRNA: 3'- -CGCCaCUCGUU-CG---UC-CCUCCgCgCCG- -5' |
|||||||
6510 | 3' | -60.3 | NC_001847.1 | + | 33714 | 0.67 | 0.639976 |
Target: 5'- gGCGcGUGGcCGAGCuGGGGGaGCGaCGcGCa -3' miRNA: 3'- -CGC-CACUcGUUCGuCCCUC-CGC-GC-CG- -5' |
|||||||
6510 | 3' | -60.3 | NC_001847.1 | + | 132490 | 0.67 | 0.639976 |
Target: 5'- gGCGGaggacGGGgAGGaCGGGGAGGaCGaagaGGCg -3' miRNA: 3'- -CGCCa----CUCgUUC-GUCCCUCC-GCg---CCG- -5' |
|||||||
6510 | 3' | -60.3 | NC_001847.1 | + | 124904 | 0.67 | 0.639976 |
Target: 5'- aGCGGgcccGGCAGGCGcgccGGGGGCGacagcgGGCg -3' miRNA: 3'- -CGCCac--UCGUUCGUc---CCUCCGCg-----CCG- -5' |
|||||||
6510 | 3' | -60.3 | NC_001847.1 | + | 104074 | 0.67 | 0.639976 |
Target: 5'- aGCGGcgcgccGAGCccccAGCGGuuGGcGGCGCGGUg -3' miRNA: 3'- -CGCCa-----CUCGu---UCGUC--CCuCCGCGCCG- -5' |
|||||||
6510 | 3' | -60.3 | NC_001847.1 | + | 78344 | 0.67 | 0.609873 |
Target: 5'- cGCGccggccccGUGAGCGcgacgaacGGCGGGcGGGCaaucGCGGCg -3' miRNA: 3'- -CGC--------CACUCGU--------UCGUCCcUCCG----CGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home