miRNA display CGI


Results 121 - 140 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 111277 0.67 0.650008
Target:  5'- gGCGGcgccGGGCcggGGGCGGcgcucggccGGGGGCGgGGCc -3'
miRNA:   3'- -CGCCa---CUCG---UUCGUC---------CCUCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 66501 0.67 0.629938
Target:  5'- uCGGccAGCGGcGCGGuGGAGGCGCGccGCc -3'
miRNA:   3'- cGCCacUCGUU-CGUC-CCUCCGCGC--CG- -5'
6510 3' -60.3 NC_001847.1 + 66792 0.67 0.650008
Target:  5'- cCGGcguacgucUGGGCGucGGUAGGcGGGGCGCuGGUc -3'
miRNA:   3'- cGCC--------ACUCGU--UCGUCC-CUCCGCG-CCG- -5'
6510 3' -60.3 NC_001847.1 + 125945 0.67 0.629938
Target:  5'- uGgGGUGGGCuGGGCuGGGcugGGGUG-GGCu -3'
miRNA:   3'- -CgCCACUCG-UUCGuCCC---UCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 43119 0.67 0.609873
Target:  5'- gGCGGUGcccGCAgacGGCGcGGGcccgcGGGCGCuGCg -3'
miRNA:   3'- -CGCCACu--CGU---UCGU-CCC-----UCCGCGcCG- -5'
6510 3' -60.3 NC_001847.1 + 124700 0.67 0.609873
Target:  5'- cGCGGUGGGCGacgAGacgaAGGagacggccGAGGCcGCGGg -3'
miRNA:   3'- -CGCCACUCGU---UCg---UCC--------CUCCG-CGCCg -5'
6510 3' -60.3 NC_001847.1 + 30909 0.67 0.609873
Target:  5'- cCGGUGAgGCGcGCGccGGcGGUGCGGCg -3'
miRNA:   3'- cGCCACU-CGUuCGUc-CCuCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 54577 0.67 0.609873
Target:  5'- aCGGccccGCGGGCuGGGcGGCGCuGGCg -3'
miRNA:   3'- cGCCacu-CGUUCGuCCCuCCGCG-CCG- -5'
6510 3' -60.3 NC_001847.1 + 73188 0.67 0.609873
Target:  5'- gGCGGgcacGGCGcGCGGGcAGGCuGCGGUc -3'
miRNA:   3'- -CGCCac--UCGUuCGUCCcUCCG-CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 75772 0.67 0.609873
Target:  5'- cGCgGGUGAaCAcGGCcgcGGGcucGGCGCGGCg -3'
miRNA:   3'- -CG-CCACUcGU-UCGu--CCCu--CCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 59353 0.67 0.619901
Target:  5'- uCGG-GGGCgGAGCGGcGGcGGCaGCGGCn -3'
miRNA:   3'- cGCCaCUCG-UUCGUC-CCuCCG-CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 128721 0.67 0.619901
Target:  5'- uGCGGgGuGCGAGgGGGaGGGgGUGGUg -3'
miRNA:   3'- -CGCCaCuCGUUCgUCCcUCCgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 13114 0.67 0.619901
Target:  5'- cGCGGccgGGGCGcGC-GGGcGGCGCcGCg -3'
miRNA:   3'- -CGCCa--CUCGUuCGuCCCuCCGCGcCG- -5'
6510 3' -60.3 NC_001847.1 + 22486 0.67 0.629938
Target:  5'- gGgGGUGAGaagGAGgAGGaaAGGCGgGGCg -3'
miRNA:   3'- -CgCCACUCg--UUCgUCCc-UCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 36162 0.67 0.629938
Target:  5'- aGCGGcu-GCAGGCAacgcuugcGGcGGuGCGCGGCg -3'
miRNA:   3'- -CGCCacuCGUUCGU--------CCcUC-CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 78344 0.67 0.609873
Target:  5'- cGCGccggccccGUGAGCGcgacgaacGGCGGGcGGGCaaucGCGGCg -3'
miRNA:   3'- -CGC--------CACUCGU--------UCGUCCcUCCG----CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 110234 0.67 0.619901
Target:  5'- aUGGggGGGgGGGgGGGGGGGCguacuugcaGCGGCc -3'
miRNA:   3'- cGCCa-CUCgUUCgUCCCUCCG---------CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 125775 0.67 0.629938
Target:  5'- uGgGGUGGGCuGGGCuGGGcugGGGUG-GGCu -3'
miRNA:   3'- -CgCCACUCG-UUCGuCCC---UCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 125865 0.67 0.629938
Target:  5'- uGgGGUGGGCuGGGCuGGGcugGGGUG-GGCu -3'
miRNA:   3'- -CgCCACUCG-UUCGuCCC---UCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 8062 0.67 0.650008
Target:  5'- cGCGGcccGCGcGCagAGGGGGGCaccgccGCGGCg -3'
miRNA:   3'- -CGCCacuCGUuCG--UCCCUCCG------CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.