miRNA display CGI


Results 141 - 160 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 124904 0.67 0.639976
Target:  5'- aGCGGgcccGGCAGGCGcgccGGGGGCGacagcgGGCg -3'
miRNA:   3'- -CGCCac--UCGUUCGUc---CCUCCGCg-----CCG- -5'
6510 3' -60.3 NC_001847.1 + 132490 0.67 0.639976
Target:  5'- gGCGGaggacGGGgAGGaCGGGGAGGaCGaagaGGCg -3'
miRNA:   3'- -CGCCa----CUCgUUC-GUCCCUCC-GCg---CCG- -5'
6510 3' -60.3 NC_001847.1 + 129303 0.68 0.589873
Target:  5'- gGCGGgccugGuGCAAgGCGGGccugccGGGCGCGGg -3'
miRNA:   3'- -CGCCa----CuCGUU-CGUCCc-----UCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 26739 0.68 0.589873
Target:  5'- gGCGGgcacgUGGGCcguaGAGCGcGGGu-GCGCGGCc -3'
miRNA:   3'- -CGCC-----ACUCG----UUCGU-CCCucCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 59029 0.68 0.589873
Target:  5'- aCGGUG-GCGggugcGGCGGcGGAGGagaGUGGUg -3'
miRNA:   3'- cGCCACuCGU-----UCGUC-CCUCCg--CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 107813 0.68 0.589873
Target:  5'- cGCGGcaaAGCGcGGCGGcGGcGGCGCGGa -3'
miRNA:   3'- -CGCCac-UCGU-UCGUC-CCuCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 96335 0.68 0.588876
Target:  5'- uCGGUGGGC-GGCGGGcuGGCGUgcgacgcgcugccGGCa -3'
miRNA:   3'- cGCCACUCGuUCGUCCcuCCGCG-------------CCG- -5'
6510 3' -60.3 NC_001847.1 + 17483 0.68 0.540497
Target:  5'- aCGGUcagGGGCAAguuGCGGGGGucGGCG-GGCg -3'
miRNA:   3'- cGCCA---CUCGUU---CGUCCCU--CCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 54498 0.68 0.579914
Target:  5'- gGCGGcgccgGGGcCGGGguGGGGGGCgGUGGn -3'
miRNA:   3'- -CGCCa----CUC-GUUCguCCCUCCG-CGCCg -5'
6510 3' -60.3 NC_001847.1 + 34461 0.68 0.540497
Target:  5'- cGCGGUGGccGCcGGCGGcGAGGaUGCGGa -3'
miRNA:   3'- -CGCCACU--CGuUCGUCcCUCC-GCGCCg -5'
6510 3' -60.3 NC_001847.1 + 32177 0.68 0.538548
Target:  5'- cGCGGcgGAGCuuggcgcgcgcGCGGcGGAGGUuaccGCGGCc -3'
miRNA:   3'- -CGCCa-CUCGuu---------CGUC-CCUCCG----CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 14568 0.68 0.560109
Target:  5'- cGCGG-GuGCuGGCGGGc--GCGCGGCu -3'
miRNA:   3'- -CGCCaCuCGuUCGUCCcucCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 132361 0.68 0.560109
Target:  5'- cGCGGcccugGAggccGCcGGCGGGGGcgccGGCGcCGGCg -3'
miRNA:   3'- -CGCCa----CU----CGuUCGUCCCU----CCGC-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 54432 0.68 0.56999
Target:  5'- gGCGGcccGGGCAgAGacgAGGGGGGCGgGGa -3'
miRNA:   3'- -CGCCa--CUCGU-UCg--UCCCUCCGCgCCg -5'
6510 3' -60.3 NC_001847.1 + 30425 0.68 0.56999
Target:  5'- aGCucGUG-GCGGGCGcGGAGGCGCcggGGCu -3'
miRNA:   3'- -CGc-CACuCGUUCGUcCCUCCGCG---CCG- -5'
6510 3' -60.3 NC_001847.1 + 59292 0.68 0.56999
Target:  5'- gGCGG-GAaaccGUAccCAGGGugccaGGGCGCGGCg -3'
miRNA:   3'- -CGCCaCU----CGUucGUCCC-----UCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 19803 0.68 0.579914
Target:  5'- gGCGGaGGcGguGGCGGuGGcGGgGCGGCa -3'
miRNA:   3'- -CGCCaCU-CguUCGUC-CCuCCgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 124547 0.68 0.579914
Target:  5'- cGCGGgccGGcgccggcccgcGCGcGCGGGGGGGCcGcCGGCg -3'
miRNA:   3'- -CGCCa--CU-----------CGUuCGUCCCUCCG-C-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 130707 0.68 0.579914
Target:  5'- cGCGGaGuGCGccgaggccgaGGgGGcGGAGGCGCGGa -3'
miRNA:   3'- -CGCCaCuCGU----------UCgUC-CCUCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 130865 0.68 0.567022
Target:  5'- gGCGGgggcGGCGccccucaaggccgaAGCGGGGAcugaggcggGGgGCGGCg -3'
miRNA:   3'- -CGCCac--UCGU--------------UCGUCCCU---------CCgCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.