Results 41 - 60 of 429 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6510 | 3' | -60.3 | NC_001847.1 | + | 54530 | 0.75 | 0.246716 |
Target: 5'- gGCGGggccguccggGGGCGcagacGGCGGGGGcGGCGCGGa -3' miRNA: 3'- -CGCCa---------CUCGU-----UCGUCCCU-CCGCGCCg -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 48485 | 0.75 | 0.218473 |
Target: 5'- cGCGGgucGAGCGcGGCgcgcuccGGGGcGGCGCGGCc -3' miRNA: 3'- -CGCCa--CUCGU-UCG-------UCCCuCCGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 23395 | 0.75 | 0.235295 |
Target: 5'- -gGGUGGGCGgagcucacuuGGCGGGGucgucGGCGgGGCg -3' miRNA: 3'- cgCCACUCGU----------UCGUCCCu----CCGCgCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 84528 | 0.75 | 0.240949 |
Target: 5'- aGCGGUaugguuGGCGGGCGGGGcgGGGCGUGcGCc -3' miRNA: 3'- -CGCCAc-----UCGUUCGUCCC--UCCGCGC-CG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 109274 | 0.75 | 0.223784 |
Target: 5'- gGCGGgcuGCAAGCgAGGGGGGCGagcaagaUGGCg -3' miRNA: 3'- -CGCCacuCGUUCG-UCCCUCCGC-------GCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 5221 | 0.75 | 0.235295 |
Target: 5'- cGCGGcG-GCcGGCGGGGcGcGCGCGGCa -3' miRNA: 3'- -CGCCaCuCGuUCGUCCCuC-CGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 115676 | 0.74 | 0.283741 |
Target: 5'- uGCgGGUGAGCGGcugcGCGGGGGcgagagccGGCuGCGGCc -3' miRNA: 3'- -CG-CCACUCGUU----CGUCCCU--------CCG-CGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 57995 | 0.74 | 0.277278 |
Target: 5'- cGCGGUGGcggcGCAGGCGGcGGcGGuCGCGcGCg -3' miRNA: 3'- -CGCCACU----CGUUCGUC-CCuCC-GCGC-CG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 119535 | 0.74 | 0.252597 |
Target: 5'- cGCGGccGGCAGGCugggcaAGGGGcGCGCGGCc -3' miRNA: 3'- -CGCCacUCGUUCG------UCCCUcCGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 14201 | 0.74 | 0.277278 |
Target: 5'- gGCGGcgGGGCuGGCGGucaggccggccGGGGGCGUGGUg -3' miRNA: 3'- -CGCCa-CUCGuUCGUC-----------CCUCCGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 98580 | 0.74 | 0.283741 |
Target: 5'- cGCGGgaaguccauugGGGCGccGGCGcuuGGGcGGCGCGGCa -3' miRNA: 3'- -CGCCa----------CUCGU--UCGU---CCCuCCGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 31702 | 0.74 | 0.283741 |
Target: 5'- uCGG-GGGCGGG--GGGAGGCGCGGg -3' miRNA: 3'- cGCCaCUCGUUCguCCCUCCGCGCCg -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 80289 | 0.74 | 0.252597 |
Target: 5'- aGCGGUGcGCGucaaAGguGGcguccGAGGCGCGGUu -3' miRNA: 3'- -CGCCACuCGU----UCguCC-----CUCCGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 107615 | 0.74 | 0.283741 |
Target: 5'- uGCGGUG-GCcugggggagacgGGGUAGGGGGGCG-GGUg -3' miRNA: 3'- -CGCCACuCG------------UUCGUCCCUCCGCgCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 134515 | 0.74 | 0.283741 |
Target: 5'- uCGG-GGGCGGG--GGGAGGCGCGGg -3' miRNA: 3'- cGCCaCUCGUUCguCCCUCCGCGCCg -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 77109 | 0.74 | 0.283741 |
Target: 5'- cGCGGU-AGC-GGCGGGGcugcuucaAGGCGCGcGCg -3' miRNA: 3'- -CGCCAcUCGuUCGUCCC--------UCCGCGC-CG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 57673 | 0.74 | 0.283741 |
Target: 5'- gGCGGUGGGCAcGguGGuGcuGGGCGCcGCg -3' miRNA: 3'- -CGCCACUCGUuCguCC-C--UCCGCGcCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 121362 | 0.74 | 0.264705 |
Target: 5'- cGCGGcGGGCGGGguGGGgagcGGGCaaGGCg -3' miRNA: 3'- -CGCCaCUCGUUCguCCC----UCCGcgCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 103237 | 0.74 | 0.258593 |
Target: 5'- cGgGGcGGGCGGGCGGcGGcGGCGgCGGCa -3' miRNA: 3'- -CgCCaCUCGUUCGUC-CCuCCGC-GCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 424 | 0.74 | 0.258593 |
Target: 5'- cGgGGcGGGCGGGCGGcGGcGGCGgCGGCa -3' miRNA: 3'- -CgCCaCUCGUUCGUC-CCuCCGC-GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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