Results 61 - 80 of 429 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6510 | 3' | -60.3 | NC_001847.1 | + | 57995 | 0.74 | 0.277278 |
Target: 5'- cGCGGUGGcggcGCAGGCGGcGGcGGuCGCGcGCg -3' miRNA: 3'- -CGCCACU----CGUUCGUC-CCuCC-GCGC-CG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 49229 | 0.73 | 0.325026 |
Target: 5'- uUGGUGcuccacGCAaacGGCGGGGuGGCGcCGGCg -3' miRNA: 3'- cGCCACu-----CGU---UCGUCCCuCCGC-GCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 32008 | 0.73 | 0.297025 |
Target: 5'- cGCGGgcgugGAGCGcgaAGCuccGGcGGGGCGCGGg -3' miRNA: 3'- -CGCCa----CUCGU---UCGu--CC-CUCCGCGCCg -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 95759 | 0.73 | 0.297025 |
Target: 5'- cGCGGgGGGCGGcGCGGGccgcucuggcgcGGGGgGCGGCg -3' miRNA: 3'- -CGCCaCUCGUU-CGUCC------------CUCCgCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 5066 | 0.73 | 0.317846 |
Target: 5'- aCGGacGGCGGGCcGGGAGcGgGCGGCa -3' miRNA: 3'- cGCCacUCGUUCGuCCCUC-CgCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 30042 | 0.73 | 0.290323 |
Target: 5'- cGCGGccgUGGGCGacguugccGGCGcGGuGGCGCGGCu -3' miRNA: 3'- -CGCC---ACUCGU--------UCGUcCCuCCGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 71893 | 0.73 | 0.290323 |
Target: 5'- cGCGGUGAugGCGcugcAGCGGcGGAcccgGcGCGCGGCg -3' miRNA: 3'- -CGCCACU--CGU----UCGUC-CCU----C-CGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 134821 | 0.73 | 0.297025 |
Target: 5'- cGCGGgcgugGAGCGcgaAGCuccGGcGGGGCGCGGg -3' miRNA: 3'- -CGCCa----CUCGU---UCGu--CC-CUCCGCGCCg -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 114908 | 0.73 | 0.315715 |
Target: 5'- cGCGG-GGGCGAGCcccuggggcacGGGGgcucgcguuuggcgGGGCGgGGCg -3' miRNA: 3'- -CGCCaCUCGUUCG-----------UCCC--------------UCCGCgCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 101082 | 0.73 | 0.325026 |
Target: 5'- cGCGGgggccGGGUcGGCGGGGcGGGCG-GGCg -3' miRNA: 3'- -CGCCa----CUCGuUCGUCCC-UCCGCgCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 3410 | 0.73 | 0.325026 |
Target: 5'- aGCGGgaGAGCA-GCccGGGGGCGCcaGGCg -3' miRNA: 3'- -CGCCa-CUCGUuCGucCCUCCGCG--CCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 16832 | 0.73 | 0.325026 |
Target: 5'- uCGGUGGcGCGGGCAucGGGGcGGCGCucgaGGCg -3' miRNA: 3'- cGCCACU-CGUUCGU--CCCU-CCGCG----CCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 95705 | 0.73 | 0.297025 |
Target: 5'- cGCGGgGGGCGGcGCGGGccgcucuggcgcGGGGgGCGGCg -3' miRNA: 3'- -CGCCaCUCGUU-CGUCC------------CUCCgCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 95651 | 0.73 | 0.297025 |
Target: 5'- cGCGGgGGGCGGcGCGGGccgcucuggcgcGGGGgGCGGCg -3' miRNA: 3'- -CGCCaCUCGUU-CGUCC------------CUCCgCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 44426 | 0.73 | 0.325026 |
Target: 5'- aGCGGcu-GCGuucgcGCAcGGGGGCGCGGCg -3' miRNA: 3'- -CGCCacuCGUu----CGUcCCUCCGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 42256 | 0.73 | 0.325026 |
Target: 5'- gGUGGUGGGC-AGCAGcaccucGAGcucGCGCGGCg -3' miRNA: 3'- -CGCCACUCGuUCGUCc-----CUC---CGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 73205 | 0.73 | 0.317134 |
Target: 5'- cGCGGgccgcgccgccgcUGAcGCgGAGgAGGGGGGCGgCGGCg -3' miRNA: 3'- -CGCC-------------ACU-CG-UUCgUCCCUCCGC-GCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 86378 | 0.73 | 0.303845 |
Target: 5'- gGCGGcGGGCcgcGGCGGcGGGcGCGCGGCu -3' miRNA: 3'- -CGCCaCUCGu--UCGUC-CCUcCGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 107879 | 0.73 | 0.317846 |
Target: 5'- aCGGacGGCGGGCcGGGAGcGgGCGGCa -3' miRNA: 3'- cGCCacUCGUUCGuCCCUC-CgCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 76417 | 0.73 | 0.317846 |
Target: 5'- gGCGG-GGGCAccccgcGGC-GGGAGcGCGCGcGCg -3' miRNA: 3'- -CGCCaCUCGU------UCGuCCCUC-CGCGC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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