miRNA display CGI


Results 81 - 100 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 32008 0.73 0.297025
Target:  5'- cGCGGgcgugGAGCGcgaAGCuccGGcGGGGCGCGGg -3'
miRNA:   3'- -CGCCa----CUCGU---UCGu--CC-CUCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 49229 0.73 0.325026
Target:  5'- uUGGUGcuccacGCAaacGGCGGGGuGGCGcCGGCg -3'
miRNA:   3'- cGCCACu-----CGU---UCGUCCCuCCGC-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 58675 0.72 0.339746
Target:  5'- gGCGGuUGGGCGGGCGGcaggcuGGccauGGCGCuGGCa -3'
miRNA:   3'- -CGCC-ACUCGUUCGUC------CCu---CCGCG-CCG- -5'
6510 3' -60.3 NC_001847.1 + 129150 0.72 0.354943
Target:  5'- gGCGGccgUGAGCAAGCAGGGAagaagGGgGaaaGGg -3'
miRNA:   3'- -CGCC---ACUCGUUCGUCCCU-----CCgCg--CCg -5'
6510 3' -60.3 NC_001847.1 + 119173 0.72 0.354172
Target:  5'- gGCGGcgGGGCAGGCAuGGGAccgucgauGGCGagcucguCGGCg -3'
miRNA:   3'- -CGCCa-CUCGUUCGU-CCCU--------CCGC-------GCCG- -5'
6510 3' -60.3 NC_001847.1 + 23192 0.72 0.353402
Target:  5'- uGgGGUGGGCugggcuaaccuugcGGCAGGucccuaggugcagucGAGGCGCGGUu -3'
miRNA:   3'- -CgCCACUCGu-------------UCGUCC---------------CUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 96305 0.72 0.347285
Target:  5'- gGCGGcG-GCAauGGCGGGGccGGCGgCGGCa -3'
miRNA:   3'- -CGCCaCuCGU--UCGUCCCu-CCGC-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 30333 0.72 0.346526
Target:  5'- cGUGGUGGugcucuacgacccGCugccCGGGGAGGCGCuGGCg -3'
miRNA:   3'- -CGCCACU-------------CGuuc-GUCCCUCCGCG-CCG- -5'
6510 3' -60.3 NC_001847.1 + 12949 0.72 0.339746
Target:  5'- uGCGGUGgggcGGCGGGCcgGGGGuGGCcCGGUc -3'
miRNA:   3'- -CGCCAC----UCGUUCG--UCCCuCCGcGCCG- -5'
6510 3' -60.3 NC_001847.1 + 132429 0.72 0.335279
Target:  5'- cGUGGUGGggcagguucgcaagcGCAAGCuGGaGGGCGCGGa -3'
miRNA:   3'- -CGCCACU---------------CGUUCGuCCcUCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 19743 0.72 0.347285
Target:  5'- cGCGGcGGGCcgcuuAGCGGGaAGGCGgGGUg -3'
miRNA:   3'- -CGCCaCUCGu----UCGUCCcUCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 46501 0.72 0.370613
Target:  5'- cGUGGccGAGCGuugccagcggcAGCGcucGGGGGGCGgCGGCg -3'
miRNA:   3'- -CGCCa-CUCGU-----------UCGU---CCCUCCGC-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 31812 0.72 0.332326
Target:  5'- gGCGGUGGGCGGcGCGGGGgcAGaGUGCGa- -3'
miRNA:   3'- -CGCCACUCGUU-CGUCCC--UC-CGCGCcg -5'
6510 3' -60.3 NC_001847.1 + 101432 0.72 0.339746
Target:  5'- cGCGGcuccGAG--AGCuGGGGGGCGCGGa -3'
miRNA:   3'- -CGCCa---CUCguUCGuCCCUCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 133146 0.72 0.346526
Target:  5'- cGUGGUGGugcucuacgacccGCugccCGGGGAGGCGCuGGCg -3'
miRNA:   3'- -CGCCACU-------------CGuuc-GUCCCUCCGCG-CCG- -5'
6510 3' -60.3 NC_001847.1 + 126005 0.72 0.353402
Target:  5'- uGgGGUGGGCugggcuaaccuugcGGCAGGucccuaggugcagucGAGGCGCGGUu -3'
miRNA:   3'- -CgCCACUCGu-------------UCGUCC---------------CUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 10094 0.72 0.354943
Target:  5'- cGCGG-GAGCAcaagcGGCGGGGAaagccgccuuCGCGGCg -3'
miRNA:   3'- -CGCCaCUCGU-----UCGUCCCUcc--------GCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 10917 0.72 0.354943
Target:  5'- cGCGGUacuaccgcGAgGCGAGCcGGcuGGCGCGGCu -3'
miRNA:   3'- -CGCCA--------CU-CGUUCGuCCcuCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 59893 0.72 0.362719
Target:  5'- cGCGuUG-GCGAGgAGGGcGGCGCGcGCg -3'
miRNA:   3'- -CGCcACuCGUUCgUCCCuCCGCGC-CG- -5'
6510 3' -60.3 NC_001847.1 + 85146 0.72 0.362719
Target:  5'- gGCGGUGGGCGcGCGGgcuccucucgcGGAGG-GCGuGCa -3'
miRNA:   3'- -CGCCACUCGUuCGUC-----------CCUCCgCGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.