Results 121 - 140 of 429 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6510 | 3' | -60.3 | NC_001847.1 | + | 16618 | 0.71 | 0.394988 |
Target: 5'- cGUGGUcuuu--GgGGGGGGGCGCGGCg -3' miRNA: 3'- -CGCCAcucguuCgUCCCUCCGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 73157 | 0.71 | 0.378623 |
Target: 5'- gGCGGcGcGcCGGGCGGaGGAGGCggacGCGGCg -3' miRNA: 3'- -CGCCaCuC-GUUCGUC-CCUCCG----CGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 6808 | 0.71 | 0.386749 |
Target: 5'- aGgGG-GAGCAAGC----AGGCGCGGCg -3' miRNA: 3'- -CgCCaCUCGUUCGucccUCCGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 100872 | 0.71 | 0.403341 |
Target: 5'- cCGG-GGGUcGGCGGcaGGGGCGCGGCc -3' miRNA: 3'- cGCCaCUCGuUCGUCc-CUCCGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 53831 | 0.71 | 0.403341 |
Target: 5'- cGCGGcuGGCGgcGGCAGcGGcGGCGCuGGCg -3' miRNA: 3'- -CGCCacUCGU--UCGUC-CCuCCGCG-CCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 66323 | 0.71 | 0.403341 |
Target: 5'- cGCGGcGcccuGC-GGCGGGuGGGGCGCGGg -3' miRNA: 3'- -CGCCaCu---CGuUCGUCC-CUCCGCGCCg -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 27759 | 0.71 | 0.403341 |
Target: 5'- gGCGGgGGGCuguGCGGGGcGuacaauaaacuGCGCGGCg -3' miRNA: 3'- -CGCCaCUCGuu-CGUCCCuC-----------CGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 101148 | 0.71 | 0.41522 |
Target: 5'- cGCGG-GGGCuggGGcCGGGGccggggccggggucgGGGCGCGGUc -3' miRNA: 3'- -CGCCaCUCGu--UC-GUCCC---------------UCCGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 15765 | 0.71 | 0.390031 |
Target: 5'- cGCGGgcgGcccgcuuucgccggcGGCAAGCGccgcgcggcGGGAGGCgGCGGUg -3' miRNA: 3'- -CGCCa--C---------------UCGUUCGU---------CCCUCCG-CGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 50050 | 0.71 | 0.386749 |
Target: 5'- cGCGGUG-GCGGccGCGGGuccGcGCGCGGCg -3' miRNA: 3'- -CGCCACuCGUU--CGUCCcu-C-CGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 116061 | 0.71 | 0.386749 |
Target: 5'- aGCGG-GAGCGaaAGCGGGGccGaCGaCGGCg -3' miRNA: 3'- -CGCCaCUCGU--UCGUCCCucC-GC-GCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 33546 | 0.71 | 0.4025 |
Target: 5'- cGCGGagguUGAGuCGAggcgcacGCGGGGGgcgucuGGCGCGGCc -3' miRNA: 3'- -CGCC----ACUC-GUU-------CGUCCCU------CCGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 35295 | 0.71 | 0.406713 |
Target: 5'- aCGGUGcGUggGCGGGGgcGGGCaacgcaaagcacuaaGCGGCc -3' miRNA: 3'- cGCCACuCGuuCGUCCC--UCCG---------------CGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 4969 | 0.71 | 0.411804 |
Target: 5'- cGCGccGGGgGGGCAGcuGGGGUGCGGCg -3' miRNA: 3'- -CGCcaCUCgUUCGUCc-CUCCGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 25908 | 0.71 | 0.420376 |
Target: 5'- uGCGGgGuGCGAGgGGGaGGGGgGUGGUg -3' miRNA: 3'- -CGCCaCuCGUUCgUCC-CUCCgCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 10725 | 0.71 | 0.378623 |
Target: 5'- aGCGccgccAGCGAGUuuAGGGGGGCGgGGCc -3' miRNA: 3'- -CGCcac--UCGUUCG--UCCCUCCGCgCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 117315 | 0.71 | 0.378623 |
Target: 5'- cGCGaUGGGCGaccuAGCGGcGGGGG-GCGGCc -3' miRNA: 3'- -CGCcACUCGU----UCGUC-CCUCCgCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 109621 | 0.71 | 0.386749 |
Target: 5'- aGgGG-GAGCAAGC----AGGCGCGGCg -3' miRNA: 3'- -CgCCaCUCGUUCGucccUCCGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 41159 | 0.71 | 0.403341 |
Target: 5'- cGCGaGUGAGCGcGCGGcGcGGGCGCGcGUg -3' miRNA: 3'- -CGC-CACUCGUuCGUC-CcUCCGCGC-CG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 119113 | 0.7 | 0.428183 |
Target: 5'- gGCGGcgGGGCAGGCAuGGGGccgucgauGGCGagcucguCGGCg -3' miRNA: 3'- -CGCCa-CUCGUUCGU-CCCU--------CCGC-------GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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