Results 81 - 100 of 429 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6510 | 3' | -60.3 | NC_001847.1 | + | 42256 | 0.73 | 0.325026 |
Target: 5'- gGUGGUGGGC-AGCAGcaccucGAGcucGCGCGGCg -3' miRNA: 3'- -CGCCACUCGuUCGUCc-----CUC---CGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 49229 | 0.73 | 0.325026 |
Target: 5'- uUGGUGcuccacGCAaacGGCGGGGuGGCGcCGGCg -3' miRNA: 3'- cGCCACu-----CGU---UCGUCCCuCCGC-GCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 42726 | 0.72 | 0.332326 |
Target: 5'- cGCGGcGGGCGGccGCGcGGGcGGCGgGGCg -3' miRNA: 3'- -CGCCaCUCGUU--CGU-CCCuCCGCgCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 31812 | 0.72 | 0.332326 |
Target: 5'- gGCGGUGGGCGGcGCGGGGgcAGaGUGCGa- -3' miRNA: 3'- -CGCCACUCGUU-CGUCCC--UC-CGCGCcg -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 127340 | 0.72 | 0.332326 |
Target: 5'- gGCGGccGGCugccgcGGCAGGGGcGGCGgGGCc -3' miRNA: 3'- -CGCCacUCGu-----UCGUCCCU-CCGCgCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 132429 | 0.72 | 0.335279 |
Target: 5'- cGUGGUGGggcagguucgcaagcGCAAGCuGGaGGGCGCGGa -3' miRNA: 3'- -CGCCACU---------------CGUUCGuCCcUCCGCGCCg -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 83241 | 0.72 | 0.337507 |
Target: 5'- cGCGGccgGGGCGgcggccgaaagcgcGGCGGGGgcGGGCGCagaGGCg -3' miRNA: 3'- -CGCCa--CUCGU--------------UCGUCCC--UCCGCG---CCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 58675 | 0.72 | 0.339746 |
Target: 5'- gGCGGuUGGGCGGGCGGcaggcuGGccauGGCGCuGGCa -3' miRNA: 3'- -CGCC-ACUCGUUCGUC------CCu---CCGCG-CCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 101432 | 0.72 | 0.339746 |
Target: 5'- cGCGGcuccGAG--AGCuGGGGGGCGCGGa -3' miRNA: 3'- -CGCCa---CUCguUCGuCCCUCCGCGCCg -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 12949 | 0.72 | 0.339746 |
Target: 5'- uGCGGUGgggcGGCGGGCcgGGGGuGGCcCGGUc -3' miRNA: 3'- -CGCCAC----UCGUUCG--UCCCuCCGcGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 133146 | 0.72 | 0.346526 |
Target: 5'- cGUGGUGGugcucuacgacccGCugccCGGGGAGGCGCuGGCg -3' miRNA: 3'- -CGCCACU-------------CGuuc-GUCCCUCCGCG-CCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 30333 | 0.72 | 0.346526 |
Target: 5'- cGUGGUGGugcucuacgacccGCugccCGGGGAGGCGCuGGCg -3' miRNA: 3'- -CGCCACU-------------CGuuc-GUCCCUCCGCG-CCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 96305 | 0.72 | 0.347285 |
Target: 5'- gGCGGcG-GCAauGGCGGGGccGGCGgCGGCa -3' miRNA: 3'- -CGCCaCuCGU--UCGUCCCu-CCGC-GCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 19743 | 0.72 | 0.347285 |
Target: 5'- cGCGGcGGGCcgcuuAGCGGGaAGGCGgGGUg -3' miRNA: 3'- -CGCCaCUCGu----UCGUCCcUCCGCgCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 126005 | 0.72 | 0.353402 |
Target: 5'- uGgGGUGGGCugggcuaaccuugcGGCAGGucccuaggugcagucGAGGCGCGGUu -3' miRNA: 3'- -CgCCACUCGu-------------UCGUCC---------------CUCCGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 23192 | 0.72 | 0.353402 |
Target: 5'- uGgGGUGGGCugggcuaaccuugcGGCAGGucccuaggugcagucGAGGCGCGGUu -3' miRNA: 3'- -CgCCACUCGu-------------UCGUCC---------------CUCCGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 119173 | 0.72 | 0.354172 |
Target: 5'- gGCGGcgGGGCAGGCAuGGGAccgucgauGGCGagcucguCGGCg -3' miRNA: 3'- -CGCCa-CUCGUUCGU-CCCU--------CCGC-------GCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 26337 | 0.72 | 0.354943 |
Target: 5'- gGCGGccgUGAGCAAGCAGGGAagaagGGgGaaaGGg -3' miRNA: 3'- -CGCC---ACUCGUUCGUCCCU-----CCgCg--CCg -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 129150 | 0.72 | 0.354943 |
Target: 5'- gGCGGccgUGAGCAAGCAGGGAagaagGGgGaaaGGg -3' miRNA: 3'- -CGCC---ACUCGUUCGUCCCU-----CCgCg--CCg -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 10094 | 0.72 | 0.354943 |
Target: 5'- cGCGG-GAGCAcaagcGGCGGGGAaagccgccuuCGCGGCg -3' miRNA: 3'- -CGCCaCUCGU-----UCGUCCCUcc--------GCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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