miRNA display CGI


Results 101 - 120 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 10917 0.72 0.354943
Target:  5'- cGCGGUacuaccgcGAgGCGAGCcGGcuGGCGCGGCu -3'
miRNA:   3'- -CGCCA--------CU-CGUUCGuCCcuCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 59893 0.72 0.362719
Target:  5'- cGCGuUG-GCGAGgAGGGcGGCGCGcGCg -3'
miRNA:   3'- -CGCcACuCGUUCgUCCCuCCGCGC-CG- -5'
6510 3' -60.3 NC_001847.1 + 85146 0.72 0.362719
Target:  5'- gGCGGUGGGCGcGCGGgcuccucucgcGGAGG-GCGuGCa -3'
miRNA:   3'- -CGCCACUCGUuCGUC-----------CCUCCgCGC-CG- -5'
6510 3' -60.3 NC_001847.1 + 94468 0.72 0.362719
Target:  5'- uGCGGUGuuuauugugcGGCAaaguacagaaGGCcGcGAGGCGCGGCg -3'
miRNA:   3'- -CGCCAC----------UCGU----------UCGuCcCUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 46951 0.72 0.370613
Target:  5'- uGCGGcgaagccaagGAGCcGGCcccacuuuGGGAGGCGCaGGCu -3'
miRNA:   3'- -CGCCa---------CUCGuUCGu-------CCCUCCGCG-CCG- -5'
6510 3' -60.3 NC_001847.1 + 46501 0.72 0.370613
Target:  5'- cGUGGccGAGCGuugccagcggcAGCGcucGGGGGGCGgCGGCg -3'
miRNA:   3'- -CGCCa-CUCGU-----------UCGU---CCCUCCGC-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 102502 0.71 0.378623
Target:  5'- -aGGcGuGCAGGCAGGGcAGaGCGCGcGCc -3'
miRNA:   3'- cgCCaCuCGUUCGUCCC-UC-CGCGC-CG- -5'
6510 3' -60.3 NC_001847.1 + 117315 0.71 0.378623
Target:  5'- cGCGaUGGGCGaccuAGCGGcGGGGG-GCGGCc -3'
miRNA:   3'- -CGCcACUCGU----UCGUC-CCUCCgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 73157 0.71 0.378623
Target:  5'- gGCGGcGcGcCGGGCGGaGGAGGCggacGCGGCg -3'
miRNA:   3'- -CGCCaCuC-GUUCGUC-CCUCCG----CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 22446 0.71 0.378623
Target:  5'- cGCGGUcGGGCGAGCGGcaGAGGCGgcaGGa -3'
miRNA:   3'- -CGCCA-CUCGUUCGUCc-CUCCGCg--CCg -5'
6510 3' -60.3 NC_001847.1 + 3124 0.71 0.378623
Target:  5'- cGCGGccgaGAGCAccgggagcccGGCGGcgccGGcGGCGCGGCg -3'
miRNA:   3'- -CGCCa---CUCGU----------UCGUC----CCuCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 125259 0.71 0.378623
Target:  5'- cGCGGUcGGGCGAGCGGcaGAGGCGgcaGGa -3'
miRNA:   3'- -CGCCA-CUCGUUCGUCc-CUCCGCg--CCg -5'
6510 3' -60.3 NC_001847.1 + 56080 0.71 0.378623
Target:  5'- cGCGGcUGAGCGcGCccGGGGuGCGgGGCu -3'
miRNA:   3'- -CGCC-ACUCGUuCGucCCUC-CGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 10725 0.71 0.378623
Target:  5'- aGCGccgccAGCGAGUuuAGGGGGGCGgGGCc -3'
miRNA:   3'- -CGCcac--UCGUUCG--UCCCUCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 56876 0.71 0.378623
Target:  5'- -aGGcGAGCAGGCAGuccaGGuGCGCGGCg -3'
miRNA:   3'- cgCCaCUCGUUCGUCcc--UC-CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 113538 0.71 0.378623
Target:  5'- aGCGccgccAGCGAGUuuAGGGGGGCGgGGCc -3'
miRNA:   3'- -CGCcac--UCGUUCG--UCCCUCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 105937 0.71 0.378623
Target:  5'- cGCGGccgaGAGCAccgggagcccGGCGGcgccGGcGGCGCGGCg -3'
miRNA:   3'- -CGCCa---CUCGU----------UCGUC----CCuCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 96863 0.71 0.383485
Target:  5'- gGCGGUGGGCGgcGGUccgcgcuGGGGAGggaccgccgugcucGCGCGGg -3'
miRNA:   3'- -CGCCACUCGU--UCG-------UCCCUC--------------CGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 66959 0.71 0.386749
Target:  5'- uGCGGgcuuuuUGAGCcgucgcugcagAGGCGGGcugcGGCGCGGCg -3'
miRNA:   3'- -CGCC------ACUCG-----------UUCGUCCcu--CCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 116061 0.71 0.386749
Target:  5'- aGCGG-GAGCGaaAGCGGGGccGaCGaCGGCg -3'
miRNA:   3'- -CGCCaCUCGU--UCGUCCCucC-GC-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.