miRNA display CGI


Results 121 - 140 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 109621 0.71 0.386749
Target:  5'- aGgGG-GAGCAAGC----AGGCGCGGCg -3'
miRNA:   3'- -CgCCaCUCGUUCGucccUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 6808 0.71 0.386749
Target:  5'- aGgGG-GAGCAAGC----AGGCGCGGCg -3'
miRNA:   3'- -CgCCaCUCGUUCGucccUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 50050 0.71 0.386749
Target:  5'- cGCGGUG-GCGGccGCGGGuccGcGCGCGGCg -3'
miRNA:   3'- -CGCCACuCGUU--CGUCCcu-C-CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 15765 0.71 0.390031
Target:  5'- cGCGGgcgGcccgcuuucgccggcGGCAAGCGccgcgcggcGGGAGGCgGCGGUg -3'
miRNA:   3'- -CGCCa--C---------------UCGUUCGU---------CCCUCCG-CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 125486 0.71 0.392505
Target:  5'- gGCGGgcgcGAGgacgcccggcugcuCGAGCGGcGGGccGGCGCGGCg -3'
miRNA:   3'- -CGCCa---CUC--------------GUUCGUC-CCU--CCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 91251 0.71 0.394159
Target:  5'- gGCGGUGAGCAcGGCGaaggcaaagccccGGaAGGC-CGGCa -3'
miRNA:   3'- -CGCCACUCGU-UCGU-------------CCcUCCGcGCCG- -5'
6510 3' -60.3 NC_001847.1 + 16618 0.71 0.394988
Target:  5'- cGUGGUcuuu--GgGGGGGGGCGCGGCg -3'
miRNA:   3'- -CGCCAcucguuCgUCCCUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 82309 0.71 0.394988
Target:  5'- gGCGGgagaauGCGGGCGGGGucGC-CGGCg -3'
miRNA:   3'- -CGCCacu---CGUUCGUCCCucCGcGCCG- -5'
6510 3' -60.3 NC_001847.1 + 33546 0.71 0.4025
Target:  5'- cGCGGagguUGAGuCGAggcgcacGCGGGGGgcgucuGGCGCGGCc -3'
miRNA:   3'- -CGCC----ACUC-GUU-------CGUCCCU------CCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 53831 0.71 0.403341
Target:  5'- cGCGGcuGGCGgcGGCAGcGGcGGCGCuGGCg -3'
miRNA:   3'- -CGCCacUCGU--UCGUC-CCuCCGCG-CCG- -5'
6510 3' -60.3 NC_001847.1 + 100872 0.71 0.403341
Target:  5'- cCGG-GGGUcGGCGGcaGGGGCGCGGCc -3'
miRNA:   3'- cGCCaCUCGuUCGUCc-CUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 27759 0.71 0.403341
Target:  5'- gGCGGgGGGCuguGCGGGGcGuacaauaaacuGCGCGGCg -3'
miRNA:   3'- -CGCCaCUCGuu-CGUCCCuC-----------CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 66323 0.71 0.403341
Target:  5'- cGCGGcGcccuGC-GGCGGGuGGGGCGCGGg -3'
miRNA:   3'- -CGCCaCu---CGuUCGUCC-CUCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 41159 0.71 0.403341
Target:  5'- cGCGaGUGAGCGcGCGGcGcGGGCGCGcGUg -3'
miRNA:   3'- -CGC-CACUCGUuCGUC-CcUCCGCGC-CG- -5'
6510 3' -60.3 NC_001847.1 + 101893 0.71 0.403341
Target:  5'- cGCGGaccGC-GGCAGcGGAGGCgccGCGGCg -3'
miRNA:   3'- -CGCCacuCGuUCGUC-CCUCCG---CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 35295 0.71 0.406713
Target:  5'- aCGGUGcGUggGCGGGGgcGGGCaacgcaaagcacuaaGCGGCc -3'
miRNA:   3'- cGCCACuCGuuCGUCCC--UCCG---------------CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 4969 0.71 0.411804
Target:  5'- cGCGccGGGgGGGCAGcuGGGGUGCGGCg -3'
miRNA:   3'- -CGCcaCUCgUUCGUCc-CUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 101148 0.71 0.41522
Target:  5'- cGCGG-GGGCuggGGcCGGGGccggggccggggucgGGGCGCGGUc -3'
miRNA:   3'- -CGCCaCUCGu--UC-GUCCC---------------UCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 25908 0.71 0.420376
Target:  5'- uGCGGgGuGCGAGgGGGaGGGGgGUGGUg -3'
miRNA:   3'- -CGCCaCuCGUUCgUCC-CUCCgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 124759 0.7 0.428183
Target:  5'- cGCGGcucGCGGGCggcaccgGGGGGGGCuuucgGCGGCg -3'
miRNA:   3'- -CGCCacuCGUUCG-------UCCCUCCG-----CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.