miRNA display CGI


Results 141 - 160 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 119113 0.7 0.428183
Target:  5'- gGCGGcgGGGCAGGCAuGGGGccgucgauGGCGagcucguCGGCg -3'
miRNA:   3'- -CGCCa-CUCGUUCGU-CCCU--------CCGC-------GCCG- -5'
6510 3' -60.3 NC_001847.1 + 116445 0.7 0.429056
Target:  5'- gGCGGUGGGCGcuGGCGcacGcGcGGCGCGGUu -3'
miRNA:   3'- -CGCCACUCGU--UCGUc--C-CuCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 12603 0.7 0.429056
Target:  5'- uGCGGccAGCGaccGGCAGGGuccGG-GCGGCa -3'
miRNA:   3'- -CGCCacUCGU---UCGUCCCu--CCgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 27974 0.7 0.429056
Target:  5'- cGCGGUGgaGGCGgccgcggccggGGCGGaGGcGGCcGCGGCc -3'
miRNA:   3'- -CGCCAC--UCGU-----------UCGUC-CCuCCG-CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 130787 0.7 0.429056
Target:  5'- cGCGGUGgaGGCGgccgcggccggGGCGGaGGcGGCcGCGGCc -3'
miRNA:   3'- -CGCCAC--UCGU-----------UCGUC-CCuCCG-CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 60122 0.7 0.429056
Target:  5'- cGCGGc--GUGAGCGaGGGGGCGuCGGCg -3'
miRNA:   3'- -CGCCacuCGUUCGUcCCUCCGC-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 18721 0.7 0.435194
Target:  5'- cGCGGgGAGCGccAGCGGGcgguugauucuccaGAGGUGCGuGUg -3'
miRNA:   3'- -CGCCaCUCGU--UCGUCC--------------CUCCGCGC-CG- -5'
6510 3' -60.3 NC_001847.1 + 95154 0.7 0.436957
Target:  5'- gGgGGUGccGGCAuGGCGGGG-GGCGCgaucgggGGCg -3'
miRNA:   3'- -CgCCAC--UCGU-UCGUCCCuCCGCG-------CCG- -5'
6510 3' -60.3 NC_001847.1 + 32207 0.7 0.43784
Target:  5'- -aGGcccGCGGGCGGGGccgGGGCGCGGg -3'
miRNA:   3'- cgCCacuCGUUCGUCCC---UCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 111795 0.7 0.43784
Target:  5'- cCGG-GGGCGGGCAGacGGGGGUGgGGg -3'
miRNA:   3'- cGCCaCUCGUUCGUC--CCUCCGCgCCg -5'
6510 3' -60.3 NC_001847.1 + 128171 0.7 0.43784
Target:  5'- cCGGcaAGCugauGGCAGGG-GGCGgCGGCa -3'
miRNA:   3'- cGCCacUCGu---UCGUCCCuCCGC-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 33507 0.7 0.43784
Target:  5'- cGCGGgcgGcGGCGGGCGccgccGcGGAGGCGCcgGGCg -3'
miRNA:   3'- -CGCCa--C-UCGUUCGU-----C-CCUCCGCG--CCG- -5'
6510 3' -60.3 NC_001847.1 + 125217 0.7 0.43784
Target:  5'- cGCGGcGAGCGuGCucguccGcGGGGGCGgGGCc -3'
miRNA:   3'- -CGCCaCUCGUuCGu-----C-CCUCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 2310 0.7 0.43784
Target:  5'- gGCGGcaUGGGCcccAGCAcgcGGGcGGGCaGCGGCg -3'
miRNA:   3'- -CGCC--ACUCGu--UCGU---CCC-UCCG-CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 105123 0.7 0.43784
Target:  5'- gGCGGcaUGGGCcccAGCAcgcGGGcGGGCaGCGGCg -3'
miRNA:   3'- -CGCC--ACUCGu--UCGU---CCC-UCCG-CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 97725 0.7 0.43784
Target:  5'- gGCGG-GGGCAgaAGCGGaagcGGcGGCGgCGGCa -3'
miRNA:   3'- -CGCCaCUCGU--UCGUC----CCuCCGC-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 25358 0.7 0.43784
Target:  5'- cCGGcaAGCugauGGCAGGG-GGCGgCGGCa -3'
miRNA:   3'- cGCCacUCGu---UCGUCCCuCCGC-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 22404 0.7 0.43784
Target:  5'- cGCGGcGAGCGuGCucguccGcGGGGGCGgGGCc -3'
miRNA:   3'- -CGCCaCUCGUuCGu-----C-CCUCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 49369 0.7 0.43784
Target:  5'- cGCGGUGgucgccGGCAcuaagacuaccGGCcuGGGuGGCGCGGg -3'
miRNA:   3'- -CGCCAC------UCGU-----------UCGu-CCCuCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 135020 0.7 0.43784
Target:  5'- -aGGcccGCGGGCGGGGccgGGGCGCGGg -3'
miRNA:   3'- cgCCacuCGUUCGUCCC---UCCGCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.