miRNA display CGI


Results 81 - 100 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 10134 0.67 0.649006
Target:  5'- aGCGGgcccGGccguagcGCGAGCGGGaGGGcuuuuucgacgcGCGCGGCu -3'
miRNA:   3'- -CGCCa---CU-------CGUUCGUCC-CUC------------CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 79632 0.67 0.64399
Target:  5'- cGCGGcGGGCGccgccagcAGCAGGGcccacgucgcccauAGcagggcagcggcuaGCGCGGCg -3'
miRNA:   3'- -CGCCaCUCGU--------UCGUCCC--------------UC--------------CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 72755 0.67 0.639976
Target:  5'- -gGGUGcGCuaaagacGCGucGGGcGGCGCGGCg -3'
miRNA:   3'- cgCCACuCGuu-----CGU--CCCuCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 1261 0.67 0.639976
Target:  5'- aGCGGcgcgccGAGCccccAGCGGuuGGcGGCGCGGUg -3'
miRNA:   3'- -CGCCa-----CUCGu---UCGUC--CCuCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 42946 0.67 0.639976
Target:  5'- aGCGGccGAcgccGCGcGCGGGGGGG-GCGGg -3'
miRNA:   3'- -CGCCa-CU----CGUuCGUCCCUCCgCGCCg -5'
6510 3' -60.3 NC_001847.1 + 12701 0.67 0.639976
Target:  5'- gGCGGgGuGCAGGCAGGccGGUGCcucggGGUg -3'
miRNA:   3'- -CGCCaCuCGUUCGUCCcuCCGCG-----CCG- -5'
6510 3' -60.3 NC_001847.1 + 29677 0.67 0.639976
Target:  5'- gGCGGaggacGGGgAGGaCGGGGAGGaCGaagaGGCg -3'
miRNA:   3'- -CGCCa----CUCgUUC-GUCCCUCC-GCg---CCG- -5'
6510 3' -60.3 NC_001847.1 + 24332 0.67 0.639976
Target:  5'- cGCGG-GGGCGAuGUccaAGuGGAGGgGgGGCc -3'
miRNA:   3'- -CGCCaCUCGUU-CG---UC-CCUCCgCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 22091 0.67 0.639976
Target:  5'- aGCGGgcccGGCAGGCGcgccGGGGGCGacagcgGGCg -3'
miRNA:   3'- -CGCCac--UCGUUCGUc---CCUCCGCg-----CCG- -5'
6510 3' -60.3 NC_001847.1 + 127145 0.67 0.639976
Target:  5'- cGCGG-GGGCGAuGUccaAGuGGAGGgGgGGCc -3'
miRNA:   3'- -CGCCaCUCGUU-CG---UC-CCUCCgCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 81211 0.67 0.639976
Target:  5'- cGCGcGUaGAuGCAGGCucGGcGGCaGCGGCg -3'
miRNA:   3'- -CGC-CA-CU-CGUUCGucCCuCCG-CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 11782 0.67 0.639976
Target:  5'- -gGGcGGGCGGGCAGuGGcgcuuucgacccGGcGCGUGGCg -3'
miRNA:   3'- cgCCaCUCGUUCGUC-CC------------UC-CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 104074 0.67 0.639976
Target:  5'- aGCGGcgcgccGAGCccccAGCGGuuGGcGGCGCGGUg -3'
miRNA:   3'- -CGCCa-----CUCGu---UCGUC--CCuCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 124904 0.67 0.639976
Target:  5'- aGCGGgcccGGCAGGCGcgccGGGGGCGacagcgGGCg -3'
miRNA:   3'- -CGCCac--UCGUUCGUc---CCUCCGCg-----CCG- -5'
6510 3' -60.3 NC_001847.1 + 132490 0.67 0.639976
Target:  5'- gGCGGaggacGGGgAGGaCGGGGAGGaCGaagaGGCg -3'
miRNA:   3'- -CGCCa----CUCgUUC-GUCCCUCC-GCg---CCG- -5'
6510 3' -60.3 NC_001847.1 + 33714 0.67 0.639976
Target:  5'- gGCGcGUGGcCGAGCuGGGGGaGCGaCGcGCa -3'
miRNA:   3'- -CGC-CACUcGUUCGuCCCUC-CGC-GC-CG- -5'
6510 3' -60.3 NC_001847.1 + 59395 0.67 0.638972
Target:  5'- cGCGGcGGGCGAGCAGuuucugcucuaucGGccauccacGGCgGCGGCc -3'
miRNA:   3'- -CGCCaCUCGUUCGUC-------------CCu-------CCG-CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 85342 0.67 0.638972
Target:  5'- cGCGcccAGC-AGCAGcgcacccGGGGGCGUGGCa -3'
miRNA:   3'- -CGCcacUCGuUCGUC-------CCUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 33134 0.67 0.629938
Target:  5'- gGCGGcGAGCGcuuccGCGuGGcGA-GCGCGGCg -3'
miRNA:   3'- -CGCCaCUCGUu----CGU-CC-CUcCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 71149 0.67 0.629938
Target:  5'- cCGGcGAGCAggAGCucgcGGAccaGGUGCGGCa -3'
miRNA:   3'- cGCCaCUCGU--UCGuc--CCU---CCGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.