miRNA display CGI


Results 121 - 140 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 54577 0.67 0.609873
Target:  5'- aCGGccccGCGGGCuGGGcGGCGCuGGCg -3'
miRNA:   3'- cGCCacu-CGUUCGuCCCuCCGCG-CCG- -5'
6510 3' -60.3 NC_001847.1 + 30909 0.67 0.609873
Target:  5'- cCGGUGAgGCGcGCGccGGcGGUGCGGCg -3'
miRNA:   3'- cGCCACU-CGUuCGUc-CCuCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 37675 0.67 0.609873
Target:  5'- cGCGGgcuuAGCGcGCGGcccuGGCGCGGCu -3'
miRNA:   3'- -CGCCac--UCGUuCGUCccu-CCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 124700 0.67 0.609873
Target:  5'- cGCGGUGGGCGacgAGacgaAGGagacggccGAGGCcGCGGg -3'
miRNA:   3'- -CGCCACUCGU---UCg---UCC--------CUCCG-CGCCg -5'
6510 3' -60.3 NC_001847.1 + 43119 0.67 0.609873
Target:  5'- gGCGGUGcccGCAgacGGCGcGGGcccgcGGGCGCuGCg -3'
miRNA:   3'- -CGCCACu--CGU---UCGU-CCC-----UCCGCGcCG- -5'
6510 3' -60.3 NC_001847.1 + 57661 0.67 0.609873
Target:  5'- uCGGgccGGCGGGCcGGGccGGGCGCccGGCg -3'
miRNA:   3'- cGCCac-UCGUUCGuCCC--UCCGCG--CCG- -5'
6510 3' -60.3 NC_001847.1 + 13928 0.67 0.609873
Target:  5'- uCGGUGccGCGccgcGGCAGGGGGGcCGCcccGCg -3'
miRNA:   3'- cGCCACu-CGU----UCGUCCCUCC-GCGc--CG- -5'
6510 3' -60.3 NC_001847.1 + 32897 0.67 0.609873
Target:  5'- uCGG-GGGCcGGCGGGGAagccggGGCcGCGGa -3'
miRNA:   3'- cGCCaCUCGuUCGUCCCU------CCG-CGCCg -5'
6510 3' -60.3 NC_001847.1 + 3971 0.67 0.609873
Target:  5'- gGCGGcGAGgGcGCcGGGGGccgggcGCGCGGCc -3'
miRNA:   3'- -CGCCaCUCgUuCGuCCCUC------CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 98211 0.67 0.606868
Target:  5'- uCGGccAGCGAGaagcacagcgcgccCAGGGAGGCgacgccgugGCGGCg -3'
miRNA:   3'- cGCCacUCGUUC--------------GUCCCUCCG---------CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 59813 0.67 0.606868
Target:  5'- gGCGGUcgaGAGCAgcguuugcgccagcGccucGCGGGGcaccggccAGGCGCGGUc -3'
miRNA:   3'- -CGCCA---CUCGU--------------U----CGUCCC--------UCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 127076 0.67 0.599862
Target:  5'- gGCGGUGccccccucuGCGcGC-GGGccGCGCGGCu -3'
miRNA:   3'- -CGCCACu--------CGUuCGuCCCucCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 119508 0.67 0.599862
Target:  5'- ----cGAGCccGAGCccGGAGGgGCGGCg -3'
miRNA:   3'- cgccaCUCG--UUCGucCCUCCgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 29096 0.67 0.599862
Target:  5'- cCGGcGAGCAcGGCGcGGGcGGCGCGcgaGCg -3'
miRNA:   3'- cGCCaCUCGU-UCGU-CCCuCCGCGC---CG- -5'
6510 3' -60.3 NC_001847.1 + 11348 0.67 0.599862
Target:  5'- aGCGG-GAGCAcucguacGCGcGGccGCGCGGCg -3'
miRNA:   3'- -CGCCaCUCGUu------CGUcCCucCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 35881 0.67 0.599862
Target:  5'- gGCGGcagcugGAGUcGGCGGcGGcGGCGUGGg -3'
miRNA:   3'- -CGCCa-----CUCGuUCGUC-CCuCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 10841 0.67 0.599862
Target:  5'- cGCGcGacGGCGGcGCGuGGccGAGGCGCGGCg -3'
miRNA:   3'- -CGC-CacUCGUU-CGU-CC--CUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 131909 0.67 0.599862
Target:  5'- cCGGcGAGCAcGGCGcGGGcGGCGCGcgaGCg -3'
miRNA:   3'- cGCCaCUCGU-UCGU-CCCuCCGCGC---CG- -5'
6510 3' -60.3 NC_001847.1 + 13692 0.67 0.598862
Target:  5'- cGCGGUccacgcuGAGC--GCcGGGAcGUGCGGCa -3'
miRNA:   3'- -CGCCA-------CUCGuuCGuCCCUcCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 125385 0.67 0.598862
Target:  5'- aGCGGUaAGCGGGCgccccGGGGcAGggcccgcccggucGCGUGGCa -3'
miRNA:   3'- -CGCCAcUCGUUCG-----UCCC-UC-------------CGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.