miRNA display CGI


Results 81 - 100 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 20747 0.7 0.459334
Target:  5'- gGCGGUGAgGCGggccucgccuucgucGGCgcgcagaugcgAGGGGGGCugcagcaucGCGGCg -3'
miRNA:   3'- -CGCCACU-CGU---------------UCG-----------UCCCUCCG---------CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 21734 0.68 0.579914
Target:  5'- cGCGGgccGGcgccggcccgcGCGcGCGGGGGGGCcGcCGGCg -3'
miRNA:   3'- -CGCCa--CU-----------CGUuCGUCCCUCCG-C-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 21854 0.77 0.167301
Target:  5'- uCGGUGcAGCAGGUGGugcGGGGGCuGCGGCg -3'
miRNA:   3'- cGCCAC-UCGUUCGUC---CCUCCG-CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 21887 0.68 0.572964
Target:  5'- cGCGGUGGGCGacgagacgaaGgagacggccgaggccGCGGGcGAGGCggaggagaggaccGCGGCu -3'
miRNA:   3'- -CGCCACUCGU----------U---------------CGUCC-CUCCG-------------CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 21954 0.66 0.719398
Target:  5'- cGCGGc-GGCAccgGGGGGGGCuuucgGCGGCg -3'
miRNA:   3'- -CGCCacUCGUucgUCCCUCCG-----CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 22091 0.67 0.639976
Target:  5'- aGCGGgcccGGCAGGCGcgccGGGGGCGacagcgGGCg -3'
miRNA:   3'- -CGCCac--UCGUUCGUc---CCUCCGCg-----CCG- -5'
6510 3' -60.3 NC_001847.1 + 22234 0.69 0.511535
Target:  5'- gGCGcccGUGuAGcCGAGCAGGaagaagccgacGAGcGCGCGGCg -3'
miRNA:   3'- -CGC---CAC-UC-GUUCGUCC-----------CUC-CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 22404 0.7 0.43784
Target:  5'- cGCGGcGAGCGuGCucguccGcGGGGGCGgGGCc -3'
miRNA:   3'- -CGCCaCUCGUuCGu-----C-CCUCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 22446 0.71 0.378623
Target:  5'- cGCGGUcGGGCGAGCGGcaGAGGCGgcaGGa -3'
miRNA:   3'- -CGCCA-CUCGUUCGUCc-CUCCGCg--CCg -5'
6510 3' -60.3 NC_001847.1 + 22486 0.67 0.629938
Target:  5'- gGgGGUGAGaagGAGgAGGaaAGGCGgGGCg -3'
miRNA:   3'- -CgCCACUCg--UUCgUCCc-UCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 22572 0.67 0.598862
Target:  5'- aGCGGUaAGCGGGCgccccGGGGcAGggcccgcccggucGCGUGGCa -3'
miRNA:   3'- -CGCCAcUCGUUCG-----UCCC-UC-------------CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 22962 0.67 0.629938
Target:  5'- uGgGGUGGGCuGGGCuGGGcugGGGUG-GGCu -3'
miRNA:   3'- -CgCCACUCG-UUCGuCCC---UCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 23052 0.67 0.629938
Target:  5'- uGgGGUGGGCuGGGCuGGGcugGGGUG-GGCu -3'
miRNA:   3'- -CgCCACUCG-UUCGuCCC---UCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 23132 0.67 0.629938
Target:  5'- uGgGGUGGGCuGGGCuGGGcugGGGUG-GGCu -3'
miRNA:   3'- -CgCCACUCG-UUCGuCCC---UCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 23192 0.72 0.353402
Target:  5'- uGgGGUGGGCugggcuaaccuugcGGCAGGucccuaggugcagucGAGGCGCGGUu -3'
miRNA:   3'- -CgCCACUCGu-------------UCGUCC---------------CUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 23395 0.75 0.235295
Target:  5'- -gGGUGGGCGgagcucacuuGGCGGGGucgucGGCGgGGCg -3'
miRNA:   3'- cgCCACUCGU----------UCGUCCCu----CCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 24332 0.67 0.639976
Target:  5'- cGCGG-GGGCGAuGUccaAGuGGAGGgGgGGCc -3'
miRNA:   3'- -CGCCaCUCGUU-CG---UC-CCUCCgCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 25173 0.67 0.650008
Target:  5'- uGCGGauUGAGCAGGUAGcagcuggccaGcGAGccccgcGCGCGGCc -3'
miRNA:   3'- -CGCC--ACUCGUUCGUC----------C-CUC------CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 25174 0.66 0.656021
Target:  5'- cCGGgcGAGCGAGCgcgacacgcccgaaGGGGAGGgGgcaagacCGGCa -3'
miRNA:   3'- cGCCa-CUCGUUCG--------------UCCCUCCgC-------GCCG- -5'
6510 3' -60.3 NC_001847.1 + 25358 0.7 0.43784
Target:  5'- cCGGcaAGCugauGGCAGGG-GGCGgCGGCa -3'
miRNA:   3'- cGCCacUCGu---UCGUCCCuCCGC-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.