miRNA display CGI


Results 101 - 120 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 25719 0.79 0.134793
Target:  5'- cGCGGcUGGGCccuucacacaggcaaAAGUAGGGAGGCagggccGCGGCg -3'
miRNA:   3'- -CGCC-ACUCG---------------UUCGUCCCUCCG------CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 25742 0.69 0.483236
Target:  5'- aGCGGcG-GCGGGCGGcGGcGGCaCGGCa -3'
miRNA:   3'- -CGCCaCuCGUUCGUC-CCuCCGcGCCG- -5'
6510 3' -60.3 NC_001847.1 + 25908 0.71 0.420376
Target:  5'- uGCGGgGuGCGAGgGGGaGGGGgGUGGUg -3'
miRNA:   3'- -CGCCaCuCGUUCgUCC-CUCCgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 25978 0.77 0.175374
Target:  5'- gGCGGUcagaccaGGGCGGGCGGGcGGGcGCGCaGGCg -3'
miRNA:   3'- -CGCCA-------CUCGUUCGUCC-CUC-CGCG-CCG- -5'
6510 3' -60.3 NC_001847.1 + 26337 0.72 0.354943
Target:  5'- gGCGGccgUGAGCAAGCAGGGAagaagGGgGaaaGGg -3'
miRNA:   3'- -CGCC---ACUCGUUCGUCCCU-----CCgCg--CCg -5'
6510 3' -60.3 NC_001847.1 + 26490 0.68 0.589873
Target:  5'- gGCGGgccugGuGCAAgGCGGGccugccGGGCGCGGg -3'
miRNA:   3'- -CGCCa----CuCGUU-CGUCCc-----UCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 26739 0.68 0.589873
Target:  5'- gGCGGgcacgUGGGCcguaGAGCGcGGGu-GCGCGGCc -3'
miRNA:   3'- -CGCC-----ACUCG----UUCGU-CCCucCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 27190 0.66 0.689921
Target:  5'- cGCGGUGGG--GGUGGGGGGGgGgaaGGg -3'
miRNA:   3'- -CGCCACUCguUCGUCCCUCCgCg--CCg -5'
6510 3' -60.3 NC_001847.1 + 27521 0.75 0.233621
Target:  5'- cGCGGcG-GC-GGCGGGGAcgcccgagaacggcGGCGCGGCg -3'
miRNA:   3'- -CGCCaCuCGuUCGUCCCU--------------CCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 27714 0.7 0.47397
Target:  5'- gGCGG-GGGCAagggcgucAGCGGcGGAaGcCGCGGCg -3'
miRNA:   3'- -CGCCaCUCGU--------UCGUC-CCUcC-GCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 27746 0.79 0.126815
Target:  5'- gGCGGauGGUggGCGGGGAGGaCGCGGa -3'
miRNA:   3'- -CGCCacUCGuuCGUCCCUCC-GCGCCg -5'
6510 3' -60.3 NC_001847.1 + 27759 0.71 0.403341
Target:  5'- gGCGGgGGGCuguGCGGGGcGuacaauaaacuGCGCGGCg -3'
miRNA:   3'- -CGCCaCUCGuu-CGUCCCuC-----------CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 27974 0.7 0.429056
Target:  5'- cGCGGUGgaGGCGgccgcggccggGGCGGaGGcGGCcGCGGCc -3'
miRNA:   3'- -CGCCAC--UCGU-----------UCGUC-CCuCCG-CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 28052 0.68 0.567022
Target:  5'- gGCGGgggcGGCGccccucaaggccgaAGCGGGGAcugaggcggGGgGCGGCg -3'
miRNA:   3'- -CGCCac--UCGU--------------UCGUCCCU---------CCgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 29065 0.76 0.193985
Target:  5'- gGCGGUGGGCugcguGGCGGuGGcGG-GCGGCg -3'
miRNA:   3'- -CGCCACUCGu----UCGUC-CCuCCgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 29096 0.67 0.599862
Target:  5'- cCGGcGAGCAcGGCGcGGGcGGCGCGcgaGCg -3'
miRNA:   3'- cGCCaCUCGU-UCGU-CCCuCCGCGC---CG- -5'
6510 3' -60.3 NC_001847.1 + 29320 0.7 0.47397
Target:  5'- cGCGGcccGCGAcGCGGuGGAGcgcGCGCGGCu -3'
miRNA:   3'- -CGCCacuCGUU-CGUC-CCUC---CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 29427 0.69 0.492588
Target:  5'- uGCGcGccAGCGAGCGcuGGGGCGUGGCg -3'
miRNA:   3'- -CGC-CacUCGUUCGUccCUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 29548 0.68 0.560109
Target:  5'- cGCGGcccugGAggccGCcGGCGGGGGcgccGGCGcCGGCg -3'
miRNA:   3'- -CGCCa----CU----CGuUCGUCCCU----CCGC-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 29677 0.67 0.639976
Target:  5'- gGCGGaggacGGGgAGGaCGGGGAGGaCGaagaGGCg -3'
miRNA:   3'- -CGCCa----CUCgUUC-GUCCCUCC-GCg---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.