miRNA display CGI


Results 121 - 140 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 30042 0.73 0.290323
Target:  5'- cGCGGccgUGGGCGacguugccGGCGcGGuGGCGCGGCu -3'
miRNA:   3'- -CGCC---ACUCGU--------UCGUcCCuCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 30333 0.72 0.346526
Target:  5'- cGUGGUGGugcucuacgacccGCugccCGGGGAGGCGCuGGCg -3'
miRNA:   3'- -CGCCACU-------------CGuuc-GUCCCUCCGCG-CCG- -5'
6510 3' -60.3 NC_001847.1 + 30425 0.68 0.56999
Target:  5'- aGCucGUG-GCGGGCGcGGAGGCGCcggGGCu -3'
miRNA:   3'- -CGc-CACuCGUUCGUcCCUCCGCG---CCG- -5'
6510 3' -60.3 NC_001847.1 + 30461 0.68 0.559124
Target:  5'- -aGGUGGGCcgcuuucugcAGCGcuGGGAcgcgaucGGCGCGGCc -3'
miRNA:   3'- cgCCACUCGu---------UCGU--CCCU-------CCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 30585 0.7 0.43784
Target:  5'- cGCGGUgGAGUAccucugcgcgcGGCuGGccgcGGCGCGGCg -3'
miRNA:   3'- -CGCCA-CUCGU-----------UCGuCCcu--CCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 30909 0.67 0.609873
Target:  5'- cCGGUGAgGCGcGCGccGGcGGUGCGGCg -3'
miRNA:   3'- cGCCACU-CGUuCGUc-CCuCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 31606 0.7 0.455712
Target:  5'- cGCGGgaaGGgAGGgAGGGGGcGCGaCGGCg -3'
miRNA:   3'- -CGCCac-UCgUUCgUCCCUC-CGC-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 31702 0.74 0.283741
Target:  5'- uCGG-GGGCGGG--GGGAGGCGCGGg -3'
miRNA:   3'- cGCCaCUCGUUCguCCCUCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 31812 0.72 0.332326
Target:  5'- gGCGGUGGGCGGcGCGGGGgcAGaGUGCGa- -3'
miRNA:   3'- -CGCCACUCGUU-CGUCCC--UC-CGCGCcg -5'
6510 3' -60.3 NC_001847.1 + 31937 0.69 0.530777
Target:  5'- cGCGGcGGGUAAGCGGacGAGccugcCGCGGCg -3'
miRNA:   3'- -CGCCaCUCGUUCGUCc-CUCc----GCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 32008 0.73 0.297025
Target:  5'- cGCGGgcgugGAGCGcgaAGCuccGGcGGGGCGCGGg -3'
miRNA:   3'- -CGCCa----CUCGU---UCGu--CC-CUCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 32075 0.7 0.454809
Target:  5'- gGCGG-GGGCcggggaagauuggGGGgAGGGGGGaaaCGCGGCu -3'
miRNA:   3'- -CGCCaCUCG-------------UUCgUCCCUCC---GCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 32177 0.68 0.538548
Target:  5'- cGCGGcgGAGCuuggcgcgcgcGCGGcGGAGGUuaccGCGGCc -3'
miRNA:   3'- -CGCCa-CUCGuu---------CGUC-CCUCCG----CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 32207 0.7 0.43784
Target:  5'- -aGGcccGCGGGCGGGGccgGGGCGCGGg -3'
miRNA:   3'- cgCCacuCGUUCGUCCC---UCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 32315 0.66 0.719398
Target:  5'- cCGG--GGUc-GCAGGGGGcccGCGCGGCg -3'
miRNA:   3'- cGCCacUCGuuCGUCCCUC---CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 32345 0.76 0.193038
Target:  5'- cGCGGaggGGGCccagcccccgcGCGGGGGGGCGcCGGCg -3'
miRNA:   3'- -CGCCa--CUCGuu---------CGUCCCUCCGC-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 32404 0.69 0.496352
Target:  5'- cGUGGgggguuucgccuugGGGC-AGCcGGGGGGUGCGGg -3'
miRNA:   3'- -CGCCa-------------CUCGuUCGuCCCUCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 32650 0.68 0.560109
Target:  5'- aGCuGGaGGGCGAGguGGacGGCGcCGGCg -3'
miRNA:   3'- -CG-CCaCUCGUUCguCCcuCCGC-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 32897 0.67 0.609873
Target:  5'- uCGG-GGGCcGGCGGGGAagccggGGCcGCGGa -3'
miRNA:   3'- cGCCaCUCGuUCGUCCCU------CCG-CGCCg -5'
6510 3' -60.3 NC_001847.1 + 32944 0.7 0.47397
Target:  5'- gGCGGggccGGGgGGGCGGaGGAGGC-CGGg -3'
miRNA:   3'- -CGCCa---CUCgUUCGUC-CCUCCGcGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.