miRNA display CGI


Results 141 - 160 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 32983 0.69 0.530777
Target:  5'- gGCGccgGGGCGGGCAGGGcGGC-CGGn -3'
miRNA:   3'- -CGCca-CUCGUUCGUCCCuCCGcGCCg -5'
6510 3' -60.3 NC_001847.1 + 33009 0.77 0.171508
Target:  5'- aGCGGccgggGGGCGcGCGGGGcgAGGCGCGGa -3'
miRNA:   3'- -CGCCa----CUCGUuCGUCCC--UCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 33134 0.67 0.629938
Target:  5'- gGCGGcGAGCGcuuccGCGuGGcGA-GCGCGGCg -3'
miRNA:   3'- -CGCCaCUCGUu----CGU-CC-CUcCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 33507 0.7 0.43784
Target:  5'- cGCGGgcgGcGGCGGGCGccgccGcGGAGGCGCcgGGCg -3'
miRNA:   3'- -CGCCa--C-UCGUUCGU-----C-CCUCCGCG--CCG- -5'
6510 3' -60.3 NC_001847.1 + 33546 0.71 0.4025
Target:  5'- cGCGGagguUGAGuCGAggcgcacGCGGGGGgcgucuGGCGCGGCc -3'
miRNA:   3'- -CGCC----ACUC-GUU-------CGUCCCU------CCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 33660 0.68 0.560109
Target:  5'- cGCGcGUGGccGCGGcccgcGCGGGGcuagAGGCGCaGGCg -3'
miRNA:   3'- -CGC-CACU--CGUU-----CGUCCC----UCCGCG-CCG- -5'
6510 3' -60.3 NC_001847.1 + 33714 0.67 0.639976
Target:  5'- gGCGcGUGGcCGAGCuGGGGGaGCGaCGcGCa -3'
miRNA:   3'- -CGC-CACUcGUUCGuCCCUC-CGC-GC-CG- -5'
6510 3' -60.3 NC_001847.1 + 33829 0.76 0.203676
Target:  5'- -aGGgGAGCGGGCuuGGGAGuCGCGGCg -3'
miRNA:   3'- cgCCaCUCGUUCGu-CCCUCcGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 33853 0.7 0.464794
Target:  5'- nCGGgagaGAccGCGGGCuGGGGGGCG-GGCa -3'
miRNA:   3'- cGCCa---CU--CGUUCGuCCCUCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 34014 0.66 0.699804
Target:  5'- gGCGGUGcugGGCAccgcGCuGGGccAGGCgaugggccccGCGGCg -3'
miRNA:   3'- -CGCCAC---UCGUu---CGuCCC--UCCG----------CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 34149 0.7 0.446726
Target:  5'- cGCGGcGAGCGcgcugcgcgaGGCGGcuGAGGCGCuGCg -3'
miRNA:   3'- -CGCCaCUCGU----------UCGUCc-CUCCGCGcCG- -5'
6510 3' -60.3 NC_001847.1 + 34461 0.68 0.540497
Target:  5'- cGCGGUGGccGCcGGCGGcGAGGaUGCGGa -3'
miRNA:   3'- -CGCCACU--CGuUCGUCcCUCC-GCGCCg -5'
6510 3' -60.3 NC_001847.1 + 35177 0.66 0.699804
Target:  5'- cCGG-GGGCAcGCGGccuucgaggaGGAGcgcGCGCGGCu -3'
miRNA:   3'- cGCCaCUCGUuCGUC----------CCUC---CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 35228 0.7 0.47397
Target:  5'- cGCGGacgUGcuGCAGGCGgccGGcGGGcGCGCGGCg -3'
miRNA:   3'- -CGCC---ACu-CGUUCGU---CC-CUC-CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 35295 0.71 0.406713
Target:  5'- aCGGUGcGUggGCGGGGgcGGGCaacgcaaagcacuaaGCGGCc -3'
miRNA:   3'- cGCCACuCGuuCGUCCC--UCCG---------------CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 35881 0.67 0.599862
Target:  5'- gGCGGcagcugGAGUcGGCGGcGGcGGCGUGGg -3'
miRNA:   3'- -CGCCa-----CUCGuUCGUC-CCuCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 36162 0.67 0.629938
Target:  5'- aGCGGcu-GCAGGCAacgcuugcGGcGGuGCGCGGCg -3'
miRNA:   3'- -CGCCacuCGUUCGU--------CCcUC-CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 36459 0.7 0.471208
Target:  5'- cGCGGcUGuGUGAGCGGGaccugcaccugcgcGGGcGCGUGGCg -3'
miRNA:   3'- -CGCC-ACuCGUUCGUCC--------------CUC-CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 36628 0.69 0.521121
Target:  5'- cGCGGUGGGCGacaAGCuGGcuguGGCGCuGUg -3'
miRNA:   3'- -CGCCACUCGU---UCGuCCcu--CCGCGcCG- -5'
6510 3' -60.3 NC_001847.1 + 36974 0.68 0.540497
Target:  5'- cGCGGgcgccGGCGAGCGGGcccgcgccGAgcGGCGgCGGCg -3'
miRNA:   3'- -CGCCac---UCGUUCGUCC--------CU--CCGC-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.