miRNA display CGI


Results 41 - 60 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 125259 0.71 0.378623
Target:  5'- cGCGGUcGGGCGAGCGGcaGAGGCGgcaGGa -3'
miRNA:   3'- -CGCCA-CUCGUUCGUCc-CUCCGCg--CCg -5'
6510 3' -60.3 NC_001847.1 + 125217 0.7 0.43784
Target:  5'- cGCGGcGAGCGuGCucguccGcGGGGGCGgGGCc -3'
miRNA:   3'- -CGCCaCUCGUuCGu-----C-CCUCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 125074 0.66 0.670024
Target:  5'- cGCGGcgGGGC--GCuGGGcccGCGCGGCc -3'
miRNA:   3'- -CGCCa-CUCGuuCGuCCCuc-CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 125047 0.69 0.511535
Target:  5'- gGCGcccGUGuAGcCGAGCAGGaagaagccgacGAGcGCGCGGCg -3'
miRNA:   3'- -CGC---CAC-UC-GUUCGUCC-----------CUC-CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 124904 0.67 0.639976
Target:  5'- aGCGGgcccGGCAGGCGcgccGGGGGCGacagcgGGCg -3'
miRNA:   3'- -CGCCac--UCGUUCGUc---CCUCCGCg-----CCG- -5'
6510 3' -60.3 NC_001847.1 + 124759 0.7 0.428183
Target:  5'- cGCGGcucGCGGGCggcaccgGGGGGGGCuuucgGCGGCg -3'
miRNA:   3'- -CGCCacuCGUUCG-------UCCCUCCG-----CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 124700 0.67 0.609873
Target:  5'- cGCGGUGGGCGacgAGacgaAGGagacggccGAGGCcGCGGg -3'
miRNA:   3'- -CGCCACUCGU---UCg---UCC--------CUCCG-CGCCg -5'
6510 3' -60.3 NC_001847.1 + 124700 0.68 0.589873
Target:  5'- cGCGGccaGGgGAGCcGGGcgcGGGgGCGGCa -3'
miRNA:   3'- -CGCCac-UCgUUCGuCCC---UCCgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 124547 0.68 0.579914
Target:  5'- cGCGGgccGGcgccggcccgcGCGcGCGGGGGGGCcGcCGGCg -3'
miRNA:   3'- -CGCCa--CU-----------CGUuCGUCCCUCCG-C-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 121362 0.74 0.264705
Target:  5'- cGCGGcGGGCGGGguGGGgagcGGGCaaGGCg -3'
miRNA:   3'- -CGCCaCUCGUUCguCCC----UCCGcgCCG- -5'
6510 3' -60.3 NC_001847.1 + 121189 0.73 0.290323
Target:  5'- uGCGG-GAGCGGcacuugcGCGGGGcggccccccugccgcGGCGCGGCa -3'
miRNA:   3'- -CGCCaCUCGUU-------CGUCCCu--------------CCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 120927 0.66 0.670024
Target:  5'- -aGGgcgGGGCGGGCGcGcGGGCGUGGUg -3'
miRNA:   3'- cgCCa--CUCGUUCGUcCcUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 120675 0.66 0.689921
Target:  5'- uCGGUGAGCccgGAGacccaGAGGCcGCGGCc -3'
miRNA:   3'- cGCCACUCG---UUCgucc-CUCCG-CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 119535 0.74 0.252597
Target:  5'- cGCGGccGGCAGGCugggcaAGGGGcGCGCGGCc -3'
miRNA:   3'- -CGCCacUCGUUCG------UCCCUcCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 119508 0.67 0.599862
Target:  5'- ----cGAGCccGAGCccGGAGGgGCGGCg -3'
miRNA:   3'- cgccaCUCG--UUCGucCCUCCgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 119219 0.66 0.660027
Target:  5'- cGCGGccaccgcgGGGC-GGCGGGGcAGGCauGgGGCc -3'
miRNA:   3'- -CGCCa-------CUCGuUCGUCCC-UCCG--CgCCG- -5'
6510 3' -60.3 NC_001847.1 + 119173 0.72 0.354172
Target:  5'- gGCGGcgGGGCAGGCAuGGGAccgucgauGGCGagcucguCGGCg -3'
miRNA:   3'- -CGCCa-CUCGUUCGU-CCCU--------CCGC-------GCCG- -5'
6510 3' -60.3 NC_001847.1 + 119113 0.7 0.428183
Target:  5'- gGCGGcgGGGCAGGCAuGGGGccgucgauGGCGagcucguCGGCg -3'
miRNA:   3'- -CGCCa-CUCGUUCGU-CCCU--------CCGC-------GCCG- -5'
6510 3' -60.3 NC_001847.1 + 117502 0.66 0.710613
Target:  5'- aGCGcGUGGGCAGGUuccgcuccacGCGCGGCg -3'
miRNA:   3'- -CGC-CACUCGUUCGucccuc----CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 117315 0.71 0.378623
Target:  5'- cGCGaUGGGCGaccuAGCGGcGGGGG-GCGGCc -3'
miRNA:   3'- -CGCcACUCGU----UCGUC-CCUCCgCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.