miRNA display CGI


Results 61 - 80 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 116665 0.68 0.579914
Target:  5'- cGCuGGUG-GCcuGCGuguGGGuccggcgcugcGGGCGCGGCa -3'
miRNA:   3'- -CG-CCACuCGuuCGU---CCC-----------UCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 116445 0.7 0.429056
Target:  5'- gGCGGUGGGCGcuGGCGcacGcGcGGCGCGGUu -3'
miRNA:   3'- -CGCCACUCGU--UCGUc--C-CuCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 116134 0.67 0.619901
Target:  5'- cCGGgcgcugGGGCGcGCGGcccGAGGCGCuGGCg -3'
miRNA:   3'- cGCCa-----CUCGUuCGUCc--CUCCGCG-CCG- -5'
6510 3' -60.3 NC_001847.1 + 116061 0.71 0.386749
Target:  5'- aGCGG-GAGCGaaAGCGGGGccGaCGaCGGCg -3'
miRNA:   3'- -CGCCaCUCGU--UCGUCCCucC-GC-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 115973 0.66 0.718425
Target:  5'- cGCcGUGcuGC--GCGGGGuaacaacGGGCGCGGCc -3'
miRNA:   3'- -CGcCACu-CGuuCGUCCC-------UCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 115939 0.68 0.550277
Target:  5'- uCGG-GAaCGAGCAGGGAGGgGUcGCc -3'
miRNA:   3'- cGCCaCUcGUUCGUCCCUCCgCGcCG- -5'
6510 3' -60.3 NC_001847.1 + 115689 0.75 0.240949
Target:  5'- cGCGGcgGAGCGgcuggcccGGCAGcGGGcGCGCGGCc -3'
miRNA:   3'- -CGCCa-CUCGU--------UCGUC-CCUcCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 115676 0.74 0.283741
Target:  5'- uGCgGGUGAGCGGcugcGCGGGGGcgagagccGGCuGCGGCc -3'
miRNA:   3'- -CG-CCACUCGUU----CGUCCCU--------CCG-CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 115537 0.68 0.567022
Target:  5'- cCGGgcccGAGCucgggcccggaucgGGGCGGGGAGGgG-GGCg -3'
miRNA:   3'- cGCCa---CUCG--------------UUCGUCCCUCCgCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 115275 0.68 0.559124
Target:  5'- gGCGGUG-GCGGGCuaagccGGcgcccccGGGCGCGGg -3'
miRNA:   3'- -CGCCACuCGUUCGuc----CC-------UCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 114908 0.73 0.315715
Target:  5'- cGCGG-GGGCGAGCcccuggggcacGGGGgcucgcguuuggcgGGGCGgGGCg -3'
miRNA:   3'- -CGCCaCUCGUUCG-----------UCCC--------------UCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 113538 0.71 0.378623
Target:  5'- aGCGccgccAGCGAGUuuAGGGGGGCGgGGCc -3'
miRNA:   3'- -CGCcac--UCGUUCG--UCCCUCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 112940 0.66 0.689921
Target:  5'- aCGGac-GCGuGCuGGGAGGCGCuGCu -3'
miRNA:   3'- cGCCacuCGUuCGuCCCUCCGCGcCG- -5'
6510 3' -60.3 NC_001847.1 + 112090 0.66 0.689921
Target:  5'- gGCGGUccGGcGCAAGguGGacuGGCucgaGCGGCg -3'
miRNA:   3'- -CGCCA--CU-CGUUCguCCcu-CCG----CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 112045 0.68 0.579914
Target:  5'- cGCGGUG-GCGcGCGcGGGcuacguagaGGGCGCccucGGCg -3'
miRNA:   3'- -CGCCACuCGUuCGU-CCC---------UCCGCG----CCG- -5'
6510 3' -60.3 NC_001847.1 + 111795 0.7 0.43784
Target:  5'- cCGG-GGGCGGGCAGacGGGGGUGgGGg -3'
miRNA:   3'- cGCCaCUCGUUCGUC--CCUCCGCgCCg -5'
6510 3' -60.3 NC_001847.1 + 111503 0.7 0.464794
Target:  5'- aCGGgGGGCuaGAGgAGGGGGGCGCacuGCa -3'
miRNA:   3'- cGCCaCUCG--UUCgUCCCUCCGCGc--CG- -5'
6510 3' -60.3 NC_001847.1 + 111277 0.67 0.650008
Target:  5'- gGCGGcgccGGGCcggGGGCGGcgcucggccGGGGGCGgGGCc -3'
miRNA:   3'- -CGCCa---CUCG---UUCGUC---------CCUCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 110425 0.68 0.560109
Target:  5'- cGgGGUGGGguGGgGGGGuGGGUGgGGg -3'
miRNA:   3'- -CgCCACUCguUCgUCCC-UCCGCgCCg -5'
6510 3' -60.3 NC_001847.1 + 110234 0.67 0.619901
Target:  5'- aUGGggGGGgGGGgGGGGGGGCguacuugcaGCGGCc -3'
miRNA:   3'- cGCCa-CUCgUUCgUCCCUCCG---------CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.