miRNA display CGI


Results 81 - 100 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 109652 0.77 0.171508
Target:  5'- aGCGGgGAGUu-GgGGGGGGGgGCGGCg -3'
miRNA:   3'- -CGCCaCUCGuuCgUCCCUCCgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 109621 0.71 0.386749
Target:  5'- aGgGG-GAGCAAGC----AGGCGCGGCg -3'
miRNA:   3'- -CgCCaCUCGUUCGucccUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 109274 0.75 0.223784
Target:  5'- gGCGGgcuGCAAGCgAGGGGGGCGagcaagaUGGCg -3'
miRNA:   3'- -CGCCacuCGUUCG-UCCCUCCGC-------GCCG- -5'
6510 3' -60.3 NC_001847.1 + 108964 1.12 0.000562
Target:  5'- gGCGGUGAGCGAGCAGGGAGGCGCGGCa -3'
miRNA:   3'- -CGCCACUCGUUCGUCCCUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 108870 1.13 0.000518
Target:  5'- gGCGGUGAGCAAGCAGGGAGGCGCGGCa -3'
miRNA:   3'- -CGCCACUCGUUCGUCCCUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 108034 0.75 0.235295
Target:  5'- cGCGGcG-GCcGGCGGGGcGcGCGCGGCa -3'
miRNA:   3'- -CGCCaCuCGuUCGUCCCuC-CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 107879 0.73 0.317846
Target:  5'- aCGGacGGCGGGCcGGGAGcGgGCGGCa -3'
miRNA:   3'- cGCCacUCGUUCGuCCCUC-CgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 107813 0.68 0.589873
Target:  5'- cGCGGcaaAGCGcGGCGGcGGcGGCGCGGa -3'
miRNA:   3'- -CGCCac-UCGU-UCGUC-CCuCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 107780 0.66 0.699804
Target:  5'- cGCGcccGGGgGGGCAGcuGGGGCuGCGGCg -3'
miRNA:   3'- -CGCca-CUCgUUCGUCc-CUCCG-CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 107689 0.68 0.550277
Target:  5'- gGCGGcGGGCAgcGGCAGGGcccccGCGCcGCu -3'
miRNA:   3'- -CGCCaCUCGU--UCGUCCCuc---CGCGcCG- -5'
6510 3' -60.3 NC_001847.1 + 107615 0.74 0.283741
Target:  5'- uGCGGUG-GCcugggggagacgGGGUAGGGGGGCG-GGUg -3'
miRNA:   3'- -CGCCACuCG------------UUCGUCCCUCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 106092 0.69 0.520159
Target:  5'- cGCGGccGGCGAGCAcggcgcgcagcucGGcGA-GCGCGGCg -3'
miRNA:   3'- -CGCCacUCGUUCGU-------------CC-CUcCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 105937 0.71 0.378623
Target:  5'- cGCGGccgaGAGCAccgggagcccGGCGGcgccGGcGGCGCGGCg -3'
miRNA:   3'- -CGCCa---CUCGU----------UCGUC----CCuCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 105123 0.7 0.43784
Target:  5'- gGCGGcaUGGGCcccAGCAcgcGGGcGGGCaGCGGCg -3'
miRNA:   3'- -CGCC--ACUCGu--UCGU---CCC-UCCG-CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 105047 0.66 0.708653
Target:  5'- cGCGGcgcUGGGCGcgGGCGugugguaguccccGGGcGGCacGCGGCg -3'
miRNA:   3'- -CGCC---ACUCGU--UCGU-------------CCCuCCG--CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 104886 0.77 0.180206
Target:  5'- aGCGGUGgcGGCGAGCGccccgcGGGGcccGCGCGGCg -3'
miRNA:   3'- -CGCCAC--UCGUUCGU------CCCUc--CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 104806 0.69 0.530777
Target:  5'- cGCGGUGcucgucguccAGCccGCcgccGGGGGGGCG-GGCg -3'
miRNA:   3'- -CGCCAC----------UCGuuCG----UCCCUCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 104241 0.68 0.540497
Target:  5'- cGCGGUGcGCGGGCccAGGc--GCGUGGCc -3'
miRNA:   3'- -CGCCACuCGUUCG--UCCcucCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 104074 0.67 0.639976
Target:  5'- aGCGGcgcgccGAGCccccAGCGGuuGGcGGCGCGGUg -3'
miRNA:   3'- -CGCCa-----CUCGu---UCGUC--CCuCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 103339 0.69 0.511535
Target:  5'- cGCGGaGGGCAAgugcccgacGCGGGGAa-CGUGGCg -3'
miRNA:   3'- -CGCCaCUCGUU---------CGUCCCUccGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.