miRNA display CGI


Results 101 - 120 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 103284 0.69 0.502022
Target:  5'- gGCGGcgGcGGCAgcAGCGGcGGcGGCGgGGCg -3'
miRNA:   3'- -CGCCa-C-UCGU--UCGUC-CCuCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 103237 0.74 0.258593
Target:  5'- cGgGGcGGGCGGGCGGcGGcGGCGgCGGCa -3'
miRNA:   3'- -CgCCaCUCGUUCGUC-CCuCCGC-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 102952 0.66 0.709633
Target:  5'- cGCGGgccucGGGCcccGGCcGGGGGGC-CGGg -3'
miRNA:   3'- -CGCCa----CUCGu--UCGuCCCUCCGcGCCg -5'
6510 3' -60.3 NC_001847.1 + 102849 0.66 0.709633
Target:  5'- cCGGggGGGUguuuuuGGGgGGGGGcggaaauuucGGCGCGGCg -3'
miRNA:   3'- cGCCa-CUCG------UUCgUCCCU----------CCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 102662 0.81 0.090726
Target:  5'- cCGG-GAGCGgccgcgagGGCGGGGGGGCGgGGCg -3'
miRNA:   3'- cGCCaCUCGU--------UCGUCCCUCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 102502 0.71 0.378623
Target:  5'- -aGGcGuGCAGGCAGGGcAGaGCGCGcGCc -3'
miRNA:   3'- cgCCaCuCGUUCGUCCC-UC-CGCGC-CG- -5'
6510 3' -60.3 NC_001847.1 + 102060 0.67 0.650008
Target:  5'- gGCGuGUucGGC-AGCaAGGGcAGGCGCGGg -3'
miRNA:   3'- -CGC-CAc-UCGuUCG-UCCC-UCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 101893 0.71 0.403341
Target:  5'- cGCGGaccGC-GGCAGcGGAGGCgccGCGGCg -3'
miRNA:   3'- -CGCCacuCGuUCGUC-CCUCCG---CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 101432 0.72 0.339746
Target:  5'- cGCGGcuccGAG--AGCuGGGGGGCGCGGa -3'
miRNA:   3'- -CGCCa---CUCguUCGuCCCUCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 101148 0.71 0.41522
Target:  5'- cGCGG-GGGCuggGGcCGGGGccggggccggggucgGGGCGCGGUc -3'
miRNA:   3'- -CGCCaCUCGu--UC-GUCCC---------------UCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 101082 0.73 0.325026
Target:  5'- cGCGGgggccGGGUcGGCGGGGcGGGCG-GGCg -3'
miRNA:   3'- -CGCCa----CUCGuUCGUCCC-UCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 100872 0.71 0.403341
Target:  5'- cCGG-GGGUcGGCGGcaGGGGCGCGGCc -3'
miRNA:   3'- cGCCaCUCGuUCGUCc-CUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 100535 0.82 0.083902
Target:  5'- cGCGGagUGGGUggGCGGGGAgccGGcCGCGGCg -3'
miRNA:   3'- -CGCC--ACUCGuuCGUCCCU---CC-GCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 99787 0.69 0.511535
Target:  5'- gGCGGgGGGCAGcgccugugguGCGGGGucGGaGCGGCc -3'
miRNA:   3'- -CGCCaCUCGUU----------CGUCCCu-CCgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 98770 0.69 0.51249
Target:  5'- aGCGGUagaugccgucgccaGGGCc-GCAGGGAcagucgugugguaucGGgGCGGCa -3'
miRNA:   3'- -CGCCA--------------CUCGuuCGUCCCU---------------CCgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 98580 0.74 0.283741
Target:  5'- cGCGGgaaguccauugGGGCGccGGCGcuuGGGcGGCGCGGCa -3'
miRNA:   3'- -CGCCa----------CUCGU--UCGU---CCCuCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 98211 0.67 0.606868
Target:  5'- uCGGccAGCGAGaagcacagcgcgccCAGGGAGGCgacgccgugGCGGCg -3'
miRNA:   3'- cGCCacUCGUUC--------------GUCCCUCCG---------CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 97725 0.7 0.43784
Target:  5'- gGCGG-GGGCAgaAGCGGaagcGGcGGCGgCGGCa -3'
miRNA:   3'- -CGCCaCUCGU--UCGUC----CCuCCGC-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 96904 0.66 0.660027
Target:  5'- uCGGUG-GCGuGCuggaacacGGGGGGGUGCGcGUa -3'
miRNA:   3'- cGCCACuCGUuCG--------UCCCUCCGCGC-CG- -5'
6510 3' -60.3 NC_001847.1 + 96863 0.71 0.383485
Target:  5'- gGCGGUGGGCGgcGGUccgcgcuGGGGAGggaccgccgugcucGCGCGGg -3'
miRNA:   3'- -CGCCACUCGU--UCG-------UCCCUC--------------CGCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.