miRNA display CGI


Results 121 - 140 of 429 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 96780 0.66 0.664029
Target:  5'- cCGGUGccGGCGcuggggcugaagcugGGUcGGGGGGCGCGcaGCg -3'
miRNA:   3'- cGCCAC--UCGU---------------UCGuCCCUCCGCGC--CG- -5'
6510 3' -60.3 NC_001847.1 + 96631 0.7 0.468454
Target:  5'- cGCGG-GGGCcGGCGGguacgcgucgugcgcGGGGGC-CGGCg -3'
miRNA:   3'- -CGCCaCUCGuUCGUC---------------CCUCCGcGCCG- -5'
6510 3' -60.3 NC_001847.1 + 96410 0.76 0.193985
Target:  5'- gGCGGcG-GCAauGGCGGGGccggcggcAGGCGCGGCc -3'
miRNA:   3'- -CGCCaCuCGU--UCGUCCC--------UCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 96368 0.8 0.111581
Target:  5'- gGCGGUG-GCAauGGCGGGGccGGCGgCGGCa -3'
miRNA:   3'- -CGCCACuCGU--UCGUCCCu-CCGC-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 96335 0.68 0.588876
Target:  5'- uCGGUGGGC-GGCGGGcuGGCGUgcgacgcgcugccGGCa -3'
miRNA:   3'- cGCCACUCGuUCGUCCcuCCGCG-------------CCG- -5'
6510 3' -60.3 NC_001847.1 + 96305 0.72 0.347285
Target:  5'- gGCGGcG-GCAauGGCGGGGccGGCGgCGGCa -3'
miRNA:   3'- -CGCCaCuCGU--UCGUCCCu-CCGC-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 95960 0.67 0.629938
Target:  5'- gGCGagcGUGAGCGcAGCAGccgcugccgcGGcuGCGCGGCc -3'
miRNA:   3'- -CGC---CACUCGU-UCGUC----------CCucCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 95759 0.73 0.297025
Target:  5'- cGCGGgGGGCGGcGCGGGccgcucuggcgcGGGGgGCGGCg -3'
miRNA:   3'- -CGCCaCUCGUU-CGUCC------------CUCCgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 95705 0.73 0.297025
Target:  5'- cGCGGgGGGCGGcGCGGGccgcucuggcgcGGGGgGCGGCg -3'
miRNA:   3'- -CGCCaCUCGUU-CGUCC------------CUCCgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 95651 0.73 0.297025
Target:  5'- cGCGGgGGGCGGcGCGGGccgcucuggcgcGGGGgGCGGCg -3'
miRNA:   3'- -CGCCaCUCGUU-CGUCC------------CUCCgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 95319 0.68 0.550277
Target:  5'- cGCGGc--GCcGGCAGGGccgaAGGCGCagggGGCg -3'
miRNA:   3'- -CGCCacuCGuUCGUCCC----UCCGCG----CCG- -5'
6510 3' -60.3 NC_001847.1 + 95154 0.7 0.436957
Target:  5'- gGgGGUGccGGCAuGGCGGGG-GGCGCgaucgggGGCg -3'
miRNA:   3'- -CgCCAC--UCGU-UCGUCCCuCCGCG-------CCG- -5'
6510 3' -60.3 NC_001847.1 + 95099 0.68 0.550277
Target:  5'- gGCGGgGGGCGcGauuGGGGGCGCGGa -3'
miRNA:   3'- -CGCCaCUCGUuCgucCCUCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 94853 0.68 0.550277
Target:  5'- uGCGccGAGgGGGaccuuGGGGGGCGCGGg -3'
miRNA:   3'- -CGCcaCUCgUUCgu---CCCUCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 94468 0.72 0.362719
Target:  5'- uGCGGUGuuuauugugcGGCAaaguacagaaGGCcGcGAGGCGCGGCg -3'
miRNA:   3'- -CGCCAC----------UCGU----------UCGuCcCUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 94330 0.67 0.596862
Target:  5'- gGUGGUGcAGCucccccccgaauacGAGgAGGacgcuGGCGCGGCg -3'
miRNA:   3'- -CGCCAC-UCG--------------UUCgUCCcu---CCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 94216 0.77 0.1847
Target:  5'- cGCGGcgGAGCucgcGGCGGGGcgcccGCGCGGCg -3'
miRNA:   3'- -CGCCa-CUCGu---UCGUCCCuc---CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 94147 0.66 0.660027
Target:  5'- gGUGcUGGGCGAcaucucGCGGcGGcugcuGGGCGCGGCc -3'
miRNA:   3'- -CGCcACUCGUU------CGUC-CC-----UCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 91251 0.71 0.394159
Target:  5'- gGCGGUGAGCAcGGCGaaggcaaagccccGGaAGGC-CGGCa -3'
miRNA:   3'- -CGCCACUCGU-UCGU-------------CCcUCCGcGCCG- -5'
6510 3' -60.3 NC_001847.1 + 90797 0.66 0.689921
Target:  5'- aGCGG-GAGCGAGagcgagAGcGGAgcgagagcaaaGGCGgGGCg -3'
miRNA:   3'- -CGCCaCUCGUUCg-----UC-CCU-----------CCGCgCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.