Results 101 - 120 of 429 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6510 | 3' | -60.3 | NC_001847.1 | + | 10917 | 0.72 | 0.354943 |
Target: 5'- cGCGGUacuaccgcGAgGCGAGCcGGcuGGCGCGGCu -3' miRNA: 3'- -CGCCA--------CU-CGUUCGuCCcuCCGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 59893 | 0.72 | 0.362719 |
Target: 5'- cGCGuUG-GCGAGgAGGGcGGCGCGcGCg -3' miRNA: 3'- -CGCcACuCGUUCgUCCCuCCGCGC-CG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 85146 | 0.72 | 0.362719 |
Target: 5'- gGCGGUGGGCGcGCGGgcuccucucgcGGAGG-GCGuGCa -3' miRNA: 3'- -CGCCACUCGUuCGUC-----------CCUCCgCGC-CG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 102502 | 0.71 | 0.378623 |
Target: 5'- -aGGcGuGCAGGCAGGGcAGaGCGCGcGCc -3' miRNA: 3'- cgCCaCuCGUUCGUCCC-UC-CGCGC-CG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 56080 | 0.71 | 0.378623 |
Target: 5'- cGCGGcUGAGCGcGCccGGGGuGCGgGGCu -3' miRNA: 3'- -CGCC-ACUCGUuCGucCCUC-CGCgCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 31812 | 0.72 | 0.332326 |
Target: 5'- gGCGGUGGGCGGcGCGGGGgcAGaGUGCGa- -3' miRNA: 3'- -CGCCACUCGUU-CGUCCC--UC-CGCGCcg -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 101082 | 0.73 | 0.325026 |
Target: 5'- cGCGGgggccGGGUcGGCGGGGcGGGCG-GGCg -3' miRNA: 3'- -CGCCa----CUCGuUCGUCCC-UCCGCgCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 134515 | 0.74 | 0.283741 |
Target: 5'- uCGG-GGGCGGG--GGGAGGCGCGGg -3' miRNA: 3'- cGCCaCUCGUUCguCCCUCCGCGCCg -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 98580 | 0.74 | 0.283741 |
Target: 5'- cGCGGgaaguccauugGGGCGccGGCGcuuGGGcGGCGCGGCa -3' miRNA: 3'- -CGCCa----------CUCGU--UCGU---CCCuCCGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 30042 | 0.73 | 0.290323 |
Target: 5'- cGCGGccgUGGGCGacguugccGGCGcGGuGGCGCGGCu -3' miRNA: 3'- -CGCC---ACUCGU--------UCGUcCCuCCGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 71893 | 0.73 | 0.290323 |
Target: 5'- cGCGGUGAugGCGcugcAGCGGcGGAcccgGcGCGCGGCg -3' miRNA: 3'- -CGCCACU--CGU----UCGUC-CCU----C-CGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 121189 | 0.73 | 0.290323 |
Target: 5'- uGCGG-GAGCGGcacuugcGCGGGGcggccccccugccgcGGCGCGGCa -3' miRNA: 3'- -CGCCaCUCGUU-------CGUCCCu--------------CCGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 134821 | 0.73 | 0.297025 |
Target: 5'- cGCGGgcgugGAGCGcgaAGCuccGGcGGGGCGCGGg -3' miRNA: 3'- -CGCCa----CUCGU---UCGu--CC-CUCCGCGCCg -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 114908 | 0.73 | 0.315715 |
Target: 5'- cGCGG-GGGCGAGCcccuggggcacGGGGgcucgcguuuggcgGGGCGgGGCg -3' miRNA: 3'- -CGCCaCUCGUUCG-----------UCCC--------------UCCGCgCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 76417 | 0.73 | 0.317846 |
Target: 5'- gGCGG-GGGCAccccgcGGC-GGGAGcGCGCGcGCg -3' miRNA: 3'- -CGCCaCUCGU------UCGuCCCUC-CGCGC-CG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 107879 | 0.73 | 0.317846 |
Target: 5'- aCGGacGGCGGGCcGGGAGcGgGCGGCa -3' miRNA: 3'- cGCCacUCGUUCGuCCCUC-CgCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 7699 | 0.73 | 0.320703 |
Target: 5'- uGCGGUGcuggagcgcgccuugGGCAuucaggcGCAGGGcgcGGGCGCGGa -3' miRNA: 3'- -CGCCAC---------------UCGUu------CGUCCC---UCCGCGCCg -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 42256 | 0.73 | 0.325026 |
Target: 5'- gGUGGUGGGC-AGCAGcaccucGAGcucGCGCGGCg -3' miRNA: 3'- -CGCCACUCGuUCGUCc-----CUC---CGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 44426 | 0.73 | 0.325026 |
Target: 5'- aGCGGcu-GCGuucgcGCAcGGGGGCGCGGCg -3' miRNA: 3'- -CGCCacuCGUu----CGUcCCUCCGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 3410 | 0.73 | 0.325026 |
Target: 5'- aGCGGgaGAGCA-GCccGGGGGCGCcaGGCg -3' miRNA: 3'- -CGCCa-CUCGUuCGucCCUCCGCG--CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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