miRNA display CGI


Results 121 - 140 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 91251 0.71 0.394159
Target:  5'- gGCGGUGAGCAcGGCGaaggcaaagccccGGaAGGC-CGGCa -3'
miRNA:   3'- -CGCCACUCGU-UCGU-------------CCcUCCGcGCCG- -5'
6510 3' -60.3 NC_001847.1 + 16618 0.71 0.394988
Target:  5'- cGUGGUcuuu--GgGGGGGGGCGCGGCg -3'
miRNA:   3'- -CGCCAcucguuCgUCCCUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 10094 0.72 0.354943
Target:  5'- cGCGG-GAGCAcaagcGGCGGGGAaagccgccuuCGCGGCg -3'
miRNA:   3'- -CGCCaCUCGU-----UCGUCCCUcc--------GCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 129150 0.72 0.354943
Target:  5'- gGCGGccgUGAGCAAGCAGGGAagaagGGgGaaaGGg -3'
miRNA:   3'- -CGCC---ACUCGUUCGUCCCU-----CCgCg--CCg -5'
6510 3' -60.3 NC_001847.1 + 126005 0.72 0.353402
Target:  5'- uGgGGUGGGCugggcuaaccuugcGGCAGGucccuaggugcagucGAGGCGCGGUu -3'
miRNA:   3'- -CgCCACUCGu-------------UCGUCC---------------CUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 114908 0.73 0.315715
Target:  5'- cGCGG-GGGCGAGCcccuggggcacGGGGgcucgcguuuggcgGGGCGgGGCg -3'
miRNA:   3'- -CGCCaCUCGUUCG-----------UCCC--------------UCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 76417 0.73 0.317846
Target:  5'- gGCGG-GGGCAccccgcGGC-GGGAGcGCGCGcGCg -3'
miRNA:   3'- -CGCCaCUCGU------UCGuCCCUC-CGCGC-CG- -5'
6510 3' -60.3 NC_001847.1 + 107879 0.73 0.317846
Target:  5'- aCGGacGGCGGGCcGGGAGcGgGCGGCa -3'
miRNA:   3'- cGCCacUCGUUCGuCCCUC-CgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 7699 0.73 0.320703
Target:  5'- uGCGGUGcuggagcgcgccuugGGCAuucaggcGCAGGGcgcGGGCGCGGa -3'
miRNA:   3'- -CGCCAC---------------UCGUu------CGUCCC---UCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 42256 0.73 0.325026
Target:  5'- gGUGGUGGGC-AGCAGcaccucGAGcucGCGCGGCg -3'
miRNA:   3'- -CGCCACUCGuUCGUCc-----CUC---CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 44426 0.73 0.325026
Target:  5'- aGCGGcu-GCGuucgcGCAcGGGGGCGCGGCg -3'
miRNA:   3'- -CGCCacuCGUu----CGUcCCUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 3410 0.73 0.325026
Target:  5'- aGCGGgaGAGCA-GCccGGGGGCGCcaGGCg -3'
miRNA:   3'- -CGCCa-CUCGUuCGucCCUCCGCG--CCG- -5'
6510 3' -60.3 NC_001847.1 + 100872 0.71 0.403341
Target:  5'- cCGG-GGGUcGGCGGcaGGGGCGCGGCc -3'
miRNA:   3'- cGCCaCUCGuUCGUCc-CUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 101082 0.73 0.325026
Target:  5'- cGCGGgggccGGGUcGGCGGGGcGGGCG-GGCg -3'
miRNA:   3'- -CGCCa----CUCGuUCGUCCC-UCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 31812 0.72 0.332326
Target:  5'- gGCGGUGGGCGGcGCGGGGgcAGaGUGCGa- -3'
miRNA:   3'- -CGCCACUCGUU-CGUCCC--UC-CGCGCcg -5'
6510 3' -60.3 NC_001847.1 + 83241 0.72 0.337507
Target:  5'- cGCGGccgGGGCGgcggccgaaagcgcGGCGGGGgcGGGCGCagaGGCg -3'
miRNA:   3'- -CGCCa--CUCGU--------------UCGUCCC--UCCGCG---CCG- -5'
6510 3' -60.3 NC_001847.1 + 58675 0.72 0.339746
Target:  5'- gGCGGuUGGGCGGGCGGcaggcuGGccauGGCGCuGGCa -3'
miRNA:   3'- -CGCC-ACUCGUUCGUC------CCu---CCGCG-CCG- -5'
6510 3' -60.3 NC_001847.1 + 101432 0.72 0.339746
Target:  5'- cGCGGcuccGAG--AGCuGGGGGGCGCGGa -3'
miRNA:   3'- -CGCCa---CUCguUCGuCCCUCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 133146 0.72 0.346526
Target:  5'- cGUGGUGGugcucuacgacccGCugccCGGGGAGGCGCuGGCg -3'
miRNA:   3'- -CGCCACU-------------CGuuc-GUCCCUCCGCG-CCG- -5'
6510 3' -60.3 NC_001847.1 + 19743 0.72 0.347285
Target:  5'- cGCGGcGGGCcgcuuAGCGGGaAGGCGgGGUg -3'
miRNA:   3'- -CGCCaCUCGu----UCGUCCcUCCGCgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.