miRNA display CGI


Results 101 - 120 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 4876 0.68 0.550277
Target:  5'- gGCGGcGGGCAgcGGCAGGGcccccGCGCcGCu -3'
miRNA:   3'- -CGCCaCUCGU--UCGUCCCuc---CGCGcCG- -5'
6510 3' -60.3 NC_001847.1 + 134023 0.69 0.530777
Target:  5'- gGCGGUcucgccAGCGucGCAGGGGcaCGCGGCg -3'
miRNA:   3'- -CGCCAc-----UCGUu-CGUCCCUccGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 3279 0.69 0.520159
Target:  5'- cGCGGccGGCGAGCAcggcgcgcagcucGGcGA-GCGCGGCg -3'
miRNA:   3'- -CGCCacUCGUUCGU-------------CC-CUcCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 22234 0.69 0.511535
Target:  5'- gGCGcccGUGuAGcCGAGCAGGaagaagccgacGAGcGCGCGGCg -3'
miRNA:   3'- -CGC---CAC-UC-GUUCGUCC-----------CUC-CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 72994 0.69 0.502022
Target:  5'- cGCGG-GAGCuggccGCAGcGcGGGCGCGGa -3'
miRNA:   3'- -CGCCaCUCGuu---CGUC-CcUCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 57661 0.67 0.609873
Target:  5'- uCGGgccGGCGGGCcGGGccGGGCGCccGGCg -3'
miRNA:   3'- cGCCac-UCGUUCGuCCC--UCCGCG--CCG- -5'
6510 3' -60.3 NC_001847.1 + 22962 0.67 0.629938
Target:  5'- uGgGGUGGGCuGGGCuGGGcugGGGUG-GGCu -3'
miRNA:   3'- -CgCCACUCG-UUCGuCCC---UCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 41977 0.66 0.716476
Target:  5'- uGCGuucgGGGCGucGCGgccgccuuucccgcGGGGGGCGcCGGCa -3'
miRNA:   3'- -CGCca--CUCGUu-CGU--------------CCCUCCGC-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 76748 0.66 0.709633
Target:  5'- aCGGUcGGGCGcucgGGCGGGGGGcaCGCaaaGGCg -3'
miRNA:   3'- cGCCA-CUCGU----UCGUCCCUCc-GCG---CCG- -5'
6510 3' -60.3 NC_001847.1 + 54581 0.66 0.709633
Target:  5'- cGCGcGcGAGCGAuGUucGGGGGCGCcgugGGCg -3'
miRNA:   3'- -CGC-CaCUCGUU-CGucCCUCCGCG----CCG- -5'
6510 3' -60.3 NC_001847.1 + 46774 0.66 0.708653
Target:  5'- cGCGGUaaagaggGGGgGGGgGGGGAGGgcuaCGGCa -3'
miRNA:   3'- -CGCCA-------CUCgUUCgUCCCUCCgc--GCCG- -5'
6510 3' -60.3 NC_001847.1 + 71518 0.66 0.698818
Target:  5'- cGCGGa-GGCAguAGCGGGcgaagggguagcaGAGGCacGCGGCc -3'
miRNA:   3'- -CGCCacUCGU--UCGUCC-------------CUCCG--CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 50829 0.66 0.689921
Target:  5'- aCGGggGGGCGcugcccgcGCcGGGGGGCGCuGGUg -3'
miRNA:   3'- cGCCa-CUCGUu-------CGuCCCUCCGCG-CCG- -5'
6510 3' -60.3 NC_001847.1 + 62434 0.66 0.679991
Target:  5'- -aGGUGAGCGuGUuuucGucGGCGCGGCu -3'
miRNA:   3'- cgCCACUCGUuCGuc--CcuCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 13308 0.66 0.678996
Target:  5'- cGCGGUcgucgaggcagacGGGCuccGGCAcGGGcGGCGagcaGGCg -3'
miRNA:   3'- -CGCCA-------------CUCGu--UCGU-CCCuCCGCg---CCG- -5'
6510 3' -60.3 NC_001847.1 + 68451 0.66 0.660027
Target:  5'- cGCGG-GAGCGcccGCuGuGGAGGCGagGGUu -3'
miRNA:   3'- -CGCCaCUCGUu--CGuC-CCUCCGCg-CCG- -5'
6510 3' -60.3 NC_001847.1 + 25174 0.66 0.656021
Target:  5'- cCGGgcGAGCGAGCgcgacacgcccgaaGGGGAGGgGgcaagacCGGCa -3'
miRNA:   3'- cGCCa-CUCGUUCG--------------UCCCUCCgC-------GCCG- -5'
6510 3' -60.3 NC_001847.1 + 42946 0.67 0.639976
Target:  5'- aGCGGccGAcgccGCGcGCGGGGGGG-GCGGg -3'
miRNA:   3'- -CGCCa-CU----CGUuCGUCCCUCCgCGCCg -5'
6510 3' -60.3 NC_001847.1 + 29677 0.67 0.639976
Target:  5'- gGCGGaggacGGGgAGGaCGGGGAGGaCGaagaGGCg -3'
miRNA:   3'- -CGCCa----CUCgUUC-GUCCCUCC-GCg---CCG- -5'
6510 3' -60.3 NC_001847.1 + 95960 0.67 0.629938
Target:  5'- gGCGagcGUGAGCGcAGCAGccgcugccgcGGcuGCGCGGCc -3'
miRNA:   3'- -CGC---CACUCGU-UCGUC----------CCucCGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.