miRNA display CGI


Results 21 - 40 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 4969 0.71 0.411804
Target:  5'- cGCGccGGGgGGGCAGcuGGGGUGCGGCg -3'
miRNA:   3'- -CGCcaCUCgUUCGUCc-CUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 5000 0.68 0.589873
Target:  5'- cGCGGcaaAGCGcGGCGGcGGcGGCGCGGa -3'
miRNA:   3'- -CGCCac-UCGU-UCGUC-CCuCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 5066 0.73 0.317846
Target:  5'- aCGGacGGCGGGCcGGGAGcGgGCGGCa -3'
miRNA:   3'- cGCCacUCGUUCGuCCCUC-CgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 5221 0.75 0.235295
Target:  5'- cGCGGcG-GCcGGCGGGGcGcGCGCGGCa -3'
miRNA:   3'- -CGCCaCuCGuUCGUCCCuC-CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 6057 1.13 0.000518
Target:  5'- gGCGGUGAGCAAGCAGGGAGGCGCGGCa -3'
miRNA:   3'- -CGCCACUCGUUCGUCCCUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 6094 0.69 0.511535
Target:  5'- cGCGGaGGcGCGAGaCGcccGcGAGGCGCGGCg -3'
miRNA:   3'- -CGCCaCU-CGUUC-GUc--C-CUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 6151 1.12 0.000562
Target:  5'- gGCGGUGAGCGAGCAGGGAGGCGCGGCa -3'
miRNA:   3'- -CGCCACUCGUUCGUCCCUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 6420 0.7 0.47397
Target:  5'- uCGGggaaGGCGAGUcccgAGGGGuuaggcGGCGCGGCg -3'
miRNA:   3'- cGCCac--UCGUUCG----UCCCU------CCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 6808 0.71 0.386749
Target:  5'- aGgGG-GAGCAAGC----AGGCGCGGCg -3'
miRNA:   3'- -CgCCaCUCGUUCGucccUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 6839 0.77 0.171508
Target:  5'- aGCGGgGAGUu-GgGGGGGGGgGCGGCg -3'
miRNA:   3'- -CGCCaCUCGuuCgUCCCUCCgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 7213 0.68 0.544402
Target:  5'- cGCGGcUGGGCcguccauGGCGcugcagcggcuggucGGGuggcugugcGGGCGCGGCg -3'
miRNA:   3'- -CGCC-ACUCGu------UCGU---------------CCC---------UCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 7421 0.67 0.619901
Target:  5'- aUGGggGGGgGGGgGGGGGGGCguacuugcaGCGGCc -3'
miRNA:   3'- cGCCa-CUCgUUCgUCCCUCCG---------CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 7612 0.68 0.560109
Target:  5'- cGgGGUGGGguGGgGGGGuGGGUGgGGg -3'
miRNA:   3'- -CgCCACUCguUCgUCCC-UCCGCgCCg -5'
6510 3' -60.3 NC_001847.1 + 7699 0.73 0.320703
Target:  5'- uGCGGUGcuggagcgcgccuugGGCAuucaggcGCAGGGcgcGGGCGCGGa -3'
miRNA:   3'- -CGCCAC---------------UCGUu------CGUCCC---UCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 8062 0.67 0.650008
Target:  5'- cGCGGcccGCGcGCagAGGGGGGCaccgccGCGGCg -3'
miRNA:   3'- -CGCCacuCGUuCG--UCCCUCCG------CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 8464 0.67 0.650008
Target:  5'- gGCGGcgccGGGCcggGGGCGGcgcucggccGGGGGCGgGGCc -3'
miRNA:   3'- -CGCCa---CUCG---UUCGUC---------CCUCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 8690 0.7 0.464794
Target:  5'- aCGGgGGGCuaGAGgAGGGGGGCGCacuGCa -3'
miRNA:   3'- cGCCaCUCG--UUCgUCCCUCCGCGc--CG- -5'
6510 3' -60.3 NC_001847.1 + 8982 0.7 0.43784
Target:  5'- cCGG-GGGCGGGCAGacGGGGGUGgGGg -3'
miRNA:   3'- cGCCaCUCGUUCGUC--CCUCCGCgCCg -5'
6510 3' -60.3 NC_001847.1 + 9510 0.67 0.650008
Target:  5'- aGCGGacccGAGcCGAGC-GGGcGGCGCGcuaGCg -3'
miRNA:   3'- -CGCCa---CUC-GUUCGuCCCuCCGCGC---CG- -5'
6510 3' -60.3 NC_001847.1 + 10094 0.72 0.354943
Target:  5'- cGCGG-GAGCAcaagcGGCGGGGAaagccgccuuCGCGGCg -3'
miRNA:   3'- -CGCCaCUCGU-----UCGUCCCUcc--------GCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.