miRNA display CGI


Results 41 - 60 of 814 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6511 5' -65 NC_001847.1 + 132353 0.66 0.46062
Target:  5'- gCCGCGCUcgCGGCccuggAGG-CCGCCggcggggGCGCc -3'
miRNA:   3'- -GGCGCGG--GCCG-----UCCgGGCGGaa-----CGUG- -5'
6511 5' -65 NC_001847.1 + 98120 0.66 0.469489
Target:  5'- gCGaGCCCGGC-GcCCCGCUccGCACg -3'
miRNA:   3'- gGCgCGGGCCGuCcGGGCGGaaCGUG- -5'
6511 5' -65 NC_001847.1 + 25818 0.66 0.45184
Target:  5'- gCCGCgucgGCCgGGCAGGCU-GUCU-GCAUg -3'
miRNA:   3'- -GGCG----CGGgCCGUCCGGgCGGAaCGUG- -5'
6511 5' -65 NC_001847.1 + 50678 0.66 0.46062
Target:  5'- aCGUGCCCuGCGGGCUgUGCUc-GCGCg -3'
miRNA:   3'- gGCGCGGGcCGUCCGG-GCGGaaCGUG- -5'
6511 5' -65 NC_001847.1 + 28009 0.66 0.46062
Target:  5'- -aGCGCgCGGCGuGCCgCGCUUacgagcgccUGCACa -3'
miRNA:   3'- ggCGCGgGCCGUcCGG-GCGGA---------ACGUG- -5'
6511 5' -65 NC_001847.1 + 14556 0.66 0.472166
Target:  5'- aCCGCGCCgcagcgcgggugcUGGCGGGCgCgcggcucucuaaggaCGCCgucugGCGCg -3'
miRNA:   3'- -GGCGCGG-------------GCCGUCCG-G---------------GCGGaa---CGUG- -5'
6511 5' -65 NC_001847.1 + 10125 0.66 0.469489
Target:  5'- uUCGCGgC-GaGCGGGCCCGgCCguaGCGCg -3'
miRNA:   3'- -GGCGCgGgC-CGUCCGGGC-GGaa-CGUG- -5'
6511 5' -65 NC_001847.1 + 77290 0.66 0.469489
Target:  5'- gCgGCGaCCCGaCAGGCCCGCa---CACu -3'
miRNA:   3'- -GgCGC-GGGCcGUCCGGGCGgaacGUG- -5'
6511 5' -65 NC_001847.1 + 133164 0.66 0.443154
Target:  5'- cCCGCuGCCCGGgGaggcgcuggcGGCgCCGCCcgGCGa -3'
miRNA:   3'- -GGCG-CGGGCCgU----------CCG-GGCGGaaCGUg -5'
6511 5' -65 NC_001847.1 + 19022 0.66 0.478444
Target:  5'- cCCaGCGCCCGGCcgaaAGGCCgagaagcaGCCc-GCAg -3'
miRNA:   3'- -GG-CGCGGGCCG----UCCGGg-------CGGaaCGUg -5'
6511 5' -65 NC_001847.1 + 33233 0.66 0.469489
Target:  5'- gCCGCGCCgGGCGccgcGGCgccuCCGCUgccgcgguccGCGCg -3'
miRNA:   3'- -GGCGCGGgCCGU----CCG----GGCGGaa--------CGUG- -5'
6511 5' -65 NC_001847.1 + 122229 0.66 0.477545
Target:  5'- gCGCGCCCccgcggcGGCAcGGCgCGCgCUUcCGCg -3'
miRNA:   3'- gGCGCGGG-------CCGU-CCGgGCG-GAAcGUG- -5'
6511 5' -65 NC_001847.1 + 8231 0.66 0.443154
Target:  5'- gCUGCGCCaCGcGCuGGCCUGCg--GCAg -3'
miRNA:   3'- -GGCGCGG-GC-CGuCCGGGCGgaaCGUg -5'
6511 5' -65 NC_001847.1 + 27201 0.66 0.46062
Target:  5'- -aGCGUuaGGaCGGGCgCGCCgggGCGCu -3'
miRNA:   3'- ggCGCGggCC-GUCCGgGCGGaa-CGUG- -5'
6511 5' -65 NC_001847.1 + 83608 0.66 0.46062
Target:  5'- gCCGaCGCCUgGGCGccgccCCCGCCUgccgGCGCc -3'
miRNA:   3'- -GGC-GCGGG-CCGUcc---GGGCGGAa---CGUG- -5'
6511 5' -65 NC_001847.1 + 128280 0.66 0.46062
Target:  5'- -aGCGCaaGGCGGGCCaaaGCaa-GCGCc -3'
miRNA:   3'- ggCGCGggCCGUCCGGg--CGgaaCGUG- -5'
6511 5' -65 NC_001847.1 + 127171 0.66 0.46062
Target:  5'- -gGgGCCCGaGCAGGgcccuaaaaaCCCGCaugGCGCg -3'
miRNA:   3'- ggCgCGGGC-CGUCC----------GGGCGgaaCGUG- -5'
6511 5' -65 NC_001847.1 + 95014 0.66 0.46062
Target:  5'- gUGUGCUCGGCcaaGGGaCUCGUCgugGCGCg -3'
miRNA:   3'- gGCGCGGGCCG---UCC-GGGCGGaa-CGUG- -5'
6511 5' -65 NC_001847.1 + 133412 0.66 0.45184
Target:  5'- uCUGCGCgCGGCuGGCC-GCg--GCGCg -3'
miRNA:   3'- -GGCGCGgGCCGuCCGGgCGgaaCGUG- -5'
6511 5' -65 NC_001847.1 + 46946 0.66 0.450968
Target:  5'- -gGUGUCCGGCAGcagaaagccccgcGCCCggGCCaaGCGCa -3'
miRNA:   3'- ggCGCGGGCCGUC-------------CGGG--CGGaaCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.