miRNA display CGI


Results 41 - 60 of 814 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6511 5' -65 NC_001847.1 + 3574 0.69 0.304659
Target:  5'- gCGCGCCagcugcaGGUccGGGCCCGCgagCUUcGCGCu -3'
miRNA:   3'- gGCGCGGg------CCG--UCCGGGCG---GAA-CGUG- -5'
6511 5' -65 NC_001847.1 + 3864 0.67 0.417671
Target:  5'- gCGgGCCCuccagcGGCGgcGGCCCGUCgcgcgGCGCc -3'
miRNA:   3'- gGCgCGGG------CCGU--CCGGGCGGaa---CGUG- -5'
6511 5' -65 NC_001847.1 + 3929 0.69 0.311411
Target:  5'- gCGCGCCCGcGCuGGCgCCGCg--GCGg -3'
miRNA:   3'- gGCGCGGGC-CGuCCG-GGCGgaaCGUg -5'
6511 5' -65 NC_001847.1 + 4014 0.75 0.124296
Target:  5'- gCCGgGCCCGGC--GCCCGCCUcuCGCg -3'
miRNA:   3'- -GGCgCGGGCCGucCGGGCGGAacGUG- -5'
6511 5' -65 NC_001847.1 + 4143 0.68 0.375691
Target:  5'- cUCGgGCCCGGCaucgcugcaguccucGGGCCCGCUguccucggacccgGCGu -3'
miRNA:   3'- -GGCgCGGGCCG---------------UCCGGGCGGaa-----------CGUg -5'
6511 5' -65 NC_001847.1 + 4190 0.71 0.232311
Target:  5'- gCGCGCCCGugggccgcgcGCAGGCagccaaaGCCcUGCGCg -3'
miRNA:   3'- gGCGCGGGC----------CGUCCGgg-----CGGaACGUG- -5'
6511 5' -65 NC_001847.1 + 4531 0.68 0.369491
Target:  5'- aCGUGCCucgCGGCGGccGCCCGCgggugGCGCg -3'
miRNA:   3'- gGCGCGG---GCCGUC--CGGGCGgaa--CGUG- -5'
6511 5' -65 NC_001847.1 + 4604 0.71 0.221245
Target:  5'- uCCGCcacagcucggccaGCUCGGCGcgggcGGCCCGCCg-GCGCu -3'
miRNA:   3'- -GGCG-------------CGGGCCGU-----CCGGGCGGaaCGUG- -5'
6511 5' -65 NC_001847.1 + 5237 0.68 0.361839
Target:  5'- gCGCGCgCGGCaaaGGGUuuGCCU-GCGu -3'
miRNA:   3'- gGCGCGgGCCG---UCCGggCGGAaCGUg -5'
6511 5' -65 NC_001847.1 + 5676 0.66 0.446617
Target:  5'- gUCGCGCgCGGCGGcGgCCGCCagcucaaguagccgcUUGgACa -3'
miRNA:   3'- -GGCGCGgGCCGUC-CgGGCGG---------------AACgUG- -5'
6511 5' -65 NC_001847.1 + 5794 0.74 0.151321
Target:  5'- cCCGgGCCCGGCA---CCGCgCUUGCGCu -3'
miRNA:   3'- -GGCgCGGGCCGUccgGGCG-GAACGUG- -5'
6511 5' -65 NC_001847.1 + 5829 1.09 0.00039
Target:  5'- cCCGCGCCCGGCAGGCCCGCCUUGCACc -3'
miRNA:   3'- -GGCGCGGGCCGUCCGGGCGGAACGUG- -5'
6511 5' -65 NC_001847.1 + 5887 0.66 0.487483
Target:  5'- gCGCGCagGGC-GGCCgCGCCgucgcagauugUGCGCc -3'
miRNA:   3'- gGCGCGggCCGuCCGG-GCGGa----------ACGUG- -5'
6511 5' -65 NC_001847.1 + 6284 0.68 0.339551
Target:  5'- cUCGCGCaggcagcggaccUCGGCgAGGUCgGCCUcgaUGCGCg -3'
miRNA:   3'- -GGCGCG------------GGCCG-UCCGGgCGGA---ACGUG- -5'
6511 5' -65 NC_001847.1 + 6344 0.69 0.318276
Target:  5'- gCGCGCCC-GCccGCCCGCCcUGguCu -3'
miRNA:   3'- gGCGCGGGcCGucCGGGCGGaACguG- -5'
6511 5' -65 NC_001847.1 + 6357 0.66 0.487483
Target:  5'- aCCGCGCC--GCGGGCguagCCGCUgcgGCAg -3'
miRNA:   3'- -GGCGCGGgcCGUCCG----GGCGGaa-CGUg -5'
6511 5' -65 NC_001847.1 + 6677 0.67 0.426067
Target:  5'- -gGCuagGCCgCGGC-GGCCgGCCggGCGCg -3'
miRNA:   3'- ggCG---CGG-GCCGuCCGGgCGGaaCGUG- -5'
6511 5' -65 NC_001847.1 + 6860 0.76 0.101807
Target:  5'- gCgGCGCuuG-CuuuGGCCCGCCUUGCGCu -3'
miRNA:   3'- -GgCGCGggCcGu--CCGGGCGGAACGUG- -5'
6511 5' -65 NC_001847.1 + 7403 0.74 0.154675
Target:  5'- gCGCGCUCGGCAgacggcacgcggcGGCuuGCCaagGCGCa -3'
miRNA:   3'- gGCGCGGGCCGU-------------CCGggCGGaa-CGUG- -5'
6511 5' -65 NC_001847.1 + 7801 0.69 0.304659
Target:  5'- gCCGCcccuGCCgCGGCAGccGgCCGCCUcgGCGCc -3'
miRNA:   3'- -GGCG----CGG-GCCGUC--CgGGCGGAa-CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.