miRNA display CGI


Results 21 - 40 of 814 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6511 5' -65 NC_001847.1 + 132850 0.71 0.237742
Target:  5'- aUGcCGCCCGGCGGcCCCGCCgccgacgGCGg -3'
miRNA:   3'- gGC-GCGGGCCGUCcGGGCGGaa-----CGUg -5'
6511 5' -65 NC_001847.1 + 132799 0.66 0.487483
Target:  5'- gCCGgGCCggcgCGGCGGGagCCGCCgcUGCcCg -3'
miRNA:   3'- -GGCgCGG----GCCGUCCg-GGCGGa-ACGuG- -5'
6511 5' -65 NC_001847.1 + 132623 0.68 0.381962
Target:  5'- cCCGCgGCCCGGCAgcaaagcgcgaggcGGCCCucgcgacGUCUU-CACa -3'
miRNA:   3'- -GGCG-CGGGCCGU--------------CCGGG-------CGGAAcGUG- -5'
6511 5' -65 NC_001847.1 + 132597 0.66 0.469489
Target:  5'- gCCGCcccgGCCCGGCGGcgggaGCgCCGCCggGUcCg -3'
miRNA:   3'- -GGCG----CGGGCCGUC-----CG-GGCGGaaCGuG- -5'
6511 5' -65 NC_001847.1 + 132543 0.69 0.318276
Target:  5'- uCCG-GCgCGGCGGGCUCGCg-UGCGg -3'
miRNA:   3'- -GGCgCGgGCCGUCCGGGCGgaACGUg -5'
6511 5' -65 NC_001847.1 + 132505 0.68 0.361839
Target:  5'- -gGCGCCgcaagcggcgaCGGCGGuCCCGCCgaaGCACc -3'
miRNA:   3'- ggCGCGG-----------GCCGUCcGGGCGGaa-CGUG- -5'
6511 5' -65 NC_001847.1 + 132420 0.68 0.369491
Target:  5'- cCUGCGCUCcgugguggGGCAGGUUCGCaa-GCGCa -3'
miRNA:   3'- -GGCGCGGG--------CCGUCCGGGCGgaaCGUG- -5'
6511 5' -65 NC_001847.1 + 132353 0.66 0.46062
Target:  5'- gCCGCGCUcgCGGCccuggAGG-CCGCCggcggggGCGCc -3'
miRNA:   3'- -GGCGCGG--GCCG-----UCCgGGCGGaa-----CGUG- -5'
6511 5' -65 NC_001847.1 + 132268 0.66 0.46062
Target:  5'- gCGCGgCgCGGC-GGCCCgcgcgucgGCCUggGCGCu -3'
miRNA:   3'- gGCGCgG-GCCGuCCGGG--------CGGAa-CGUG- -5'
6511 5' -65 NC_001847.1 + 132206 0.7 0.266505
Target:  5'- gCCGCGCUggaGGC-GGCCgCGCUggcgGCGCg -3'
miRNA:   3'- -GGCGCGGg--CCGuCCGG-GCGGaa--CGUG- -5'
6511 5' -65 NC_001847.1 + 132116 0.67 0.434561
Target:  5'- gCCGCcgagcuGCUCGGCGcGGCCCGCgacGCGg -3'
miRNA:   3'- -GGCG------CGGGCCGU-CCGGGCGgaaCGUg -5'
6511 5' -65 NC_001847.1 + 132038 0.7 0.266505
Target:  5'- gCCGCGgCgGGCcgcGGCCUGCCggccgcggccUGCGCg -3'
miRNA:   3'- -GGCGCgGgCCGu--CCGGGCGGa---------ACGUG- -5'
6511 5' -65 NC_001847.1 + 131983 0.68 0.369491
Target:  5'- -gGCGCUggaGGC-GGCCCGCCgcgccgccgGCGCc -3'
miRNA:   3'- ggCGCGGg--CCGuCCGGGCGGaa-------CGUG- -5'
6511 5' -65 NC_001847.1 + 131883 0.66 0.478444
Target:  5'- gCCGCGCggcgCCGGCGccCCUGCCgccggcgaGCACg -3'
miRNA:   3'- -GGCGCG----GGCCGUccGGGCGGaa------CGUG- -5'
6511 5' -65 NC_001847.1 + 131838 0.72 0.211623
Target:  5'- gCgGCGCCCGcGCcGcGCUCGCCgagcUGCGCg -3'
miRNA:   3'- -GgCGCGGGC-CGuC-CGGGCGGa---ACGUG- -5'
6511 5' -65 NC_001847.1 + 131725 0.68 0.358809
Target:  5'- gCUGCGCCUGGCcccccGGGCugcucucCCGCUgcuugcggagggcuUUGCGCg -3'
miRNA:   3'- -GGCGCGGGCCG-----UCCG-------GGCGG--------------AACGUG- -5'
6511 5' -65 NC_001847.1 + 131568 0.66 0.443154
Target:  5'- gCGgGCCCGGaccugcagcuGGCgCGCCUgcUGCAg -3'
miRNA:   3'- gGCgCGGGCCgu--------CCGgGCGGA--ACGUg -5'
6511 5' -65 NC_001847.1 + 131449 0.67 0.401187
Target:  5'- gCCGCGCCuaccuguggugCGcGCAGGCUCgcggcgGCCUgcugGCAUg -3'
miRNA:   3'- -GGCGCGG-----------GC-CGUCCGGG------CGGAa---CGUG- -5'
6511 5' -65 NC_001847.1 + 131325 0.74 0.152803
Target:  5'- gCGUgGCCCGGCAGcGCgCCGCCgccgcccggccgcgUGCGCu -3'
miRNA:   3'- gGCG-CGGGCCGUC-CG-GGCGGa-------------ACGUG- -5'
6511 5' -65 NC_001847.1 + 131253 0.67 0.409378
Target:  5'- aCCGCGCgcaaCGGCucGCuCCGCUgggagcUGCGCa -3'
miRNA:   3'- -GGCGCGg---GCCGucCG-GGCGGa-----ACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.