miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6512 5' -58.7 NC_001847.1 + 95529 0.66 0.749349
Target:  5'- -cCAGGcuUGCcCCUGGGgcuGGGGCcgcGCCg -3'
miRNA:   3'- aaGUCC--ACGcGGACCC---UCCCGaa-UGG- -5'
6512 5' -58.7 NC_001847.1 + 3977 0.66 0.749349
Target:  5'- --gAGG-GCGCCgGGGGccGGGCgcgcgGCCc -3'
miRNA:   3'- aagUCCaCGCGGaCCCU--CCCGaa---UGG- -5'
6512 5' -58.7 NC_001847.1 + 128724 0.66 0.749349
Target:  5'- --gGGGUGCGaggGGGAGGGggUggugGCCg -3'
miRNA:   3'- aagUCCACGCggaCCCUCCCgaA----UGG- -5'
6512 5' -58.7 NC_001847.1 + 124767 0.66 0.749349
Target:  5'- -gCGGGcgGCaCCgGGGGGGGCUUucggcggcgGCCc -3'
miRNA:   3'- aaGUCCa-CGcGGaCCCUCCCGAA---------UGG- -5'
6512 5' -58.7 NC_001847.1 + 111271 0.66 0.739614
Target:  5'- gUCGGaGgcgGCGCCgggccGGGGGcGGCgcucgGCCg -3'
miRNA:   3'- aAGUC-Ca--CGCGGa----CCCUC-CCGaa---UGG- -5'
6512 5' -58.7 NC_001847.1 + 8458 0.66 0.739614
Target:  5'- gUCGGaGgcgGCGCCgggccGGGGGcGGCgcucgGCCg -3'
miRNA:   3'- aAGUC-Ca--CGCGGa----CCCUC-CCGaa---UGG- -5'
6512 5' -58.7 NC_001847.1 + 134933 0.66 0.729784
Target:  5'- cUCGGGcccccggGCGCCgGGGgcgggggcgGGGGCggggGCCc -3'
miRNA:   3'- aAGUCCa------CGCGGaCCC---------UCCCGaa--UGG- -5'
6512 5' -58.7 NC_001847.1 + 32120 0.66 0.729784
Target:  5'- cUCGGGcccccggGCGCCgGGGgcgggggcgGGGGCggggGCCc -3'
miRNA:   3'- aAGUCCa------CGCGGaCCC---------UCCCGaa--UGG- -5'
6512 5' -58.7 NC_001847.1 + 53363 0.66 0.729784
Target:  5'- -cCAGGUccGCGUCauacgcGGGcAGGGCUagcUGCCg -3'
miRNA:   3'- aaGUCCA--CGCGGa-----CCC-UCCCGA---AUGG- -5'
6512 5' -58.7 NC_001847.1 + 125929 0.66 0.71987
Target:  5'- cUgGGGUGgGCUgggcugGGGuGGGCUggGCUg -3'
miRNA:   3'- aAgUCCACgCGGa-----CCCuCCCGAa-UGG- -5'
6512 5' -58.7 NC_001847.1 + 119651 0.66 0.71987
Target:  5'- -aCGGG-GCaGCCgggcGGGAGGGCaacggcgGCCc -3'
miRNA:   3'- aaGUCCaCG-CGGa---CCCUCCCGaa-----UGG- -5'
6512 5' -58.7 NC_001847.1 + 125884 0.66 0.71987
Target:  5'- cUgGGGUGgGCUgggcugGGGuGGGCUggGCUg -3'
miRNA:   3'- aAgUCCACgCGGa-----CCCuCCCGAa-UGG- -5'
6512 5' -58.7 NC_001847.1 + 23071 0.66 0.71987
Target:  5'- cUgGGGUGgGCUgggcugGGGuGGGCUggGCUg -3'
miRNA:   3'- aAgUCCACgCGGa-----CCCuCCCGAa-UGG- -5'
6512 5' -58.7 NC_001847.1 + 23116 0.66 0.71987
Target:  5'- cUgGGGUGgGCUgggcugGGGuGGGCUggGCUg -3'
miRNA:   3'- aAgUCCACgCGGa-----CCCuCCCGAa-UGG- -5'
6512 5' -58.7 NC_001847.1 + 46914 0.66 0.71987
Target:  5'- cUUCGGGggGCGCgUcGGGcccGGGCUccggGCCg -3'
miRNA:   3'- -AAGUCCa-CGCGgA-CCCu--CCCGAa---UGG- -5'
6512 5' -58.7 NC_001847.1 + 87780 0.66 0.71987
Target:  5'- gUCGGGc-CGCC-GGGGGGGCacgACUa -3'
miRNA:   3'- aAGUCCacGCGGaCCCUCCCGaa-UGG- -5'
6512 5' -58.7 NC_001847.1 + 21735 0.66 0.715882
Target:  5'- -gCGGGccgGCGCCggcccgcgcgcgcGGGGGGGCc-GCCg -3'
miRNA:   3'- aaGUCCa--CGCGGa------------CCCUCCCGaaUGG- -5'
6512 5' -58.7 NC_001847.1 + 124548 0.66 0.715882
Target:  5'- -gCGGGccgGCGCCggcccgcgcgcgcGGGGGGGCc-GCCg -3'
miRNA:   3'- aaGUCCa--CGCGGa------------CCCUCCCGaaUGG- -5'
6512 5' -58.7 NC_001847.1 + 98880 0.66 0.709879
Target:  5'- -gCGcGUGCGCCUGGGc-GGCccagGCCg -3'
miRNA:   3'- aaGUcCACGCGGACCCucCCGaa--UGG- -5'
6512 5' -58.7 NC_001847.1 + 102699 0.67 0.699822
Target:  5'- -gCAGG-GCGCC-GGGcGGGCggcgaaagGCCc -3'
miRNA:   3'- aaGUCCaCGCGGaCCCuCCCGaa------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.