Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6512 | 5' | -58.7 | NC_001847.1 | + | 134933 | 0.66 | 0.729784 |
Target: 5'- cUCGGGcccccggGCGCCgGGGgcgggggcgGGGGCggggGCCc -3' miRNA: 3'- aAGUCCa------CGCGGaCCC---------UCCCGaa--UGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 134514 | 0.67 | 0.689708 |
Target: 5'- cUCGGGgGCGgg-GGGAGGcGCggGCCg -3' miRNA: 3'- aAGUCCaCGCggaCCCUCC-CGaaUGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 131740 | 0.69 | 0.536883 |
Target: 5'- -cCGGGcUGCucucccgcuGCUUGcGGAGGGCUUugCg -3' miRNA: 3'- aaGUCC-ACG---------CGGAC-CCUCCCGAAugG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 128724 | 0.66 | 0.749349 |
Target: 5'- --gGGGUGCGaggGGGAGGGggUggugGCCg -3' miRNA: 3'- aagUCCACGCggaCCCUCCCgaA----UGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 125929 | 0.66 | 0.71987 |
Target: 5'- cUgGGGUGgGCUgggcugGGGuGGGCUggGCUg -3' miRNA: 3'- aAgUCCACgCGGa-----CCCuCCCGAa-UGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 125884 | 0.66 | 0.71987 |
Target: 5'- cUgGGGUGgGCUgggcugGGGuGGGCUggGCUg -3' miRNA: 3'- aAgUCCACgCGGa-----CCCuCCCGAa-UGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 125824 | 0.68 | 0.60779 |
Target: 5'- cUgGGGUGgGCUgGGGuGGGCUggGCUg -3' miRNA: 3'- aAgUCCACgCGGaCCCuCCCGAa-UGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 125764 | 0.68 | 0.60779 |
Target: 5'- cUgGGGUGgGCUgGGGuGGGCUggGCUg -3' miRNA: 3'- aAgUCCACgCGGaCCCuCCCGAa-UGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 125445 | 0.72 | 0.40589 |
Target: 5'- -gCAGGgcGCGUCcgGGGAGGGCggGCUu -3' miRNA: 3'- aaGUCCa-CGCGGa-CCCUCCCGaaUGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 124914 | 0.68 | 0.617022 |
Target: 5'- -gCAGGcGCGCCgGGGGcgacagcGGGCgcGCCc -3' miRNA: 3'- aaGUCCaCGCGGaCCCU-------CCCGaaUGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 124767 | 0.66 | 0.749349 |
Target: 5'- -gCGGGcgGCaCCgGGGGGGGCUUucggcggcgGCCc -3' miRNA: 3'- aaGUCCa-CGcGGaCCCUCCCGAA---------UGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 124548 | 0.66 | 0.715882 |
Target: 5'- -gCGGGccgGCGCCggcccgcgcgcgcGGGGGGGCc-GCCg -3' miRNA: 3'- aaGUCCa--CGCGGa------------CCCUCCCGaaUGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 119651 | 0.66 | 0.71987 |
Target: 5'- -aCGGG-GCaGCCgggcGGGAGGGCaacggcgGCCc -3' miRNA: 3'- aaGUCCaCG-CGGa---CCCUCCCGaa-----UGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 111271 | 0.66 | 0.739614 |
Target: 5'- gUCGGaGgcgGCGCCgggccGGGGGcGGCgcucgGCCg -3' miRNA: 3'- aAGUC-Ca--CGCGGa----CCCUC-CCGaa---UGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 108525 | 1.09 | 0.001215 |
Target: 5'- gUUCAGGUGCGCCUGGGAGGGCUUACCu -3' miRNA: 3'- -AAGUCCACGCGGACCCUCCCGAAUGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 108080 | 0.69 | 0.556913 |
Target: 5'- ---cGGUGcCGCCcGGG-GGGCUgcggGCCu -3' miRNA: 3'- aaguCCAC-GCGGaCCCuCCCGAa---UGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 102699 | 0.67 | 0.699822 |
Target: 5'- -gCAGG-GCGCC-GGGcGGGCggcgaaagGCCc -3' miRNA: 3'- aaGUCCaCGCGGaCCCuCCCGaa------UGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 98880 | 0.66 | 0.709879 |
Target: 5'- -gCGcGUGCGCCUGGGc-GGCccagGCCg -3' miRNA: 3'- aaGUcCACGCGGACCCucCCGaa--UGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 95529 | 0.66 | 0.749349 |
Target: 5'- -cCAGGcuUGCcCCUGGGgcuGGGGCcgcGCCg -3' miRNA: 3'- aaGUCC--ACGcGGACCC---UCCCGaa-UGG- -5' |
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6512 | 5' | -58.7 | NC_001847.1 | + | 87913 | 0.67 | 0.699822 |
Target: 5'- -aCAGGggcgGgGCgUGGGGcuGGGCgcgGCCg -3' miRNA: 3'- aaGUCCa---CgCGgACCCU--CCCGaa-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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