miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6512 5' -58.7 NC_001847.1 + 3977 0.66 0.749349
Target:  5'- --gAGG-GCGCCgGGGGccGGGCgcgcgGCCc -3'
miRNA:   3'- aagUCCaCGCGGaCCCU--CCCGaa---UGG- -5'
6512 5' -58.7 NC_001847.1 + 108080 0.69 0.556913
Target:  5'- ---cGGUGcCGCCcGGG-GGGCUgcggGCCu -3'
miRNA:   3'- aaguCCAC-GCGGaCCCuCCCGAa---UGG- -5'
6512 5' -58.7 NC_001847.1 + 131740 0.69 0.536883
Target:  5'- -cCGGGcUGCucucccgcuGCUUGcGGAGGGCUUugCg -3'
miRNA:   3'- aaGUCC-ACG---------CGGAC-CCUCCCGAAugG- -5'
6512 5' -58.7 NC_001847.1 + 5712 1.09 0.001215
Target:  5'- gUUCAGGUGCGCCUGGGAGGGCUUACCu -3'
miRNA:   3'- -AAGUCCACGCGGACCCUCCCGAAUGG- -5'
6512 5' -58.7 NC_001847.1 + 53363 0.66 0.729784
Target:  5'- -cCAGGUccGCGUCauacgcGGGcAGGGCUagcUGCCg -3'
miRNA:   3'- aaGUCCA--CGCGGa-----CCC-UCCCGA---AUGG- -5'
6512 5' -58.7 NC_001847.1 + 46914 0.66 0.71987
Target:  5'- cUUCGGGggGCGCgUcGGGcccGGGCUccggGCCg -3'
miRNA:   3'- -AAGUCCa-CGCGgA-CCCu--CCCGAa---UGG- -5'
6512 5' -58.7 NC_001847.1 + 23071 0.66 0.71987
Target:  5'- cUgGGGUGgGCUgggcugGGGuGGGCUggGCUg -3'
miRNA:   3'- aAgUCCACgCGGa-----CCCuCCCGAa-UGG- -5'
6512 5' -58.7 NC_001847.1 + 21735 0.66 0.715882
Target:  5'- -gCGGGccgGCGCCggcccgcgcgcgcGGGGGGGCc-GCCg -3'
miRNA:   3'- aaGUCCa--CGCGGa------------CCCUCCCGaaUGG- -5'
6512 5' -58.7 NC_001847.1 + 22953 0.67 0.648858
Target:  5'- --uGGGUGgGCUgGGGuGGGCUggGCUg -3'
miRNA:   3'- aagUCCACgCGGaCCCuCCCGAa-UGG- -5'
6512 5' -58.7 NC_001847.1 + 56811 0.69 0.577153
Target:  5'- -aCGGGgccggcGCGCCUGGGggcgcggggagGGGGCggcccaGCCg -3'
miRNA:   3'- aaGUCCa-----CGCGGACCC-----------UCCCGaa----UGG- -5'
6512 5' -58.7 NC_001847.1 + 51586 0.68 0.618049
Target:  5'- -cCGGG-GCaGCCgucGGGAGGGCagUGCUc -3'
miRNA:   3'- aaGUCCaCG-CGGa--CCCUCCCGa-AUGG- -5'
6512 5' -58.7 NC_001847.1 + 31701 0.67 0.689708
Target:  5'- cUCGGGgGCGgg-GGGAGGcGCggGCCg -3'
miRNA:   3'- aAGUCCaCGCggaCCCUCC-CGaaUGG- -5'
6512 5' -58.7 NC_001847.1 + 95529 0.66 0.749349
Target:  5'- -cCAGGcuUGCcCCUGGGgcuGGGGCcgcGCCg -3'
miRNA:   3'- aaGUCC--ACGcGGACCC---UCCCGaa-UGG- -5'
6512 5' -58.7 NC_001847.1 + 22101 0.68 0.617022
Target:  5'- -gCAGGcGCGCCgGGGGcgacagcGGGCgcGCCc -3'
miRNA:   3'- aaGUCCaCGCGGaCCCU-------CCCGaaUGG- -5'
6512 5' -58.7 NC_001847.1 + 8458 0.66 0.739614
Target:  5'- gUCGGaGgcgGCGCCgggccGGGGGcGGCgcucgGCCg -3'
miRNA:   3'- aAGUC-Ca--CGCGGa----CCCUC-CCGaa---UGG- -5'
6512 5' -58.7 NC_001847.1 + 98880 0.66 0.709879
Target:  5'- -gCGcGUGCGCCUGGGc-GGCccagGCCg -3'
miRNA:   3'- aaGUcCACGCGGACCCucCCGaa--UGG- -5'
6512 5' -58.7 NC_001847.1 + 23011 0.68 0.60779
Target:  5'- cUgGGGUGgGCUgGGGuGGGCUggGCUg -3'
miRNA:   3'- aAgUCCACgCGGaCCCuCCCGAa-UGG- -5'
6512 5' -58.7 NC_001847.1 + 14453 0.69 0.546869
Target:  5'- --gGGGUGCGCggccgcggccuCUGGGucuccGGGCUcACCg -3'
miRNA:   3'- aagUCCACGCG-----------GACCCu----CCCGAaUGG- -5'
6512 5' -58.7 NC_001847.1 + 32120 0.66 0.729784
Target:  5'- cUCGGGcccccggGCGCCgGGGgcgggggcgGGGGCggggGCCc -3'
miRNA:   3'- aAGUCCa------CGCGGaCCC---------UCCCGaa--UGG- -5'
6512 5' -58.7 NC_001847.1 + 23116 0.66 0.71987
Target:  5'- cUgGGGUGgGCUgggcugGGGuGGGCUggGCUg -3'
miRNA:   3'- aAgUCCACgCGGa-----CCCuCCCGAa-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.