Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 6512 | 5' | -58.7 | NC_001847.1 | + | 21507 | 0.7 | 0.526961 |
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Target: 5'- -cCGGGcGCGCCUcGGcGGGGGCcgcgcggGCCa -3' miRNA: 3'- aaGUCCaCGCGGA-CC-CUCCCGaa-----UGG- -5' |
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| 6512 | 5' | -58.7 | NC_001847.1 | + | 69562 | 0.7 | 0.517109 |
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Target: 5'- -gCGcGUGUGCCUGGG-GGGCcacgugGCCg -3' miRNA: 3'- aaGUcCACGCGGACCCuCCCGaa----UGG- -5' |
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| 6512 | 5' | -58.7 | NC_001847.1 | + | 61319 | 0.7 | 0.478491 |
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Target: 5'- -gCGGGUGCGCg-GGGcGGGGCggGCg -3' miRNA: 3'- aaGUCCACGCGgaCCC-UCCCGaaUGg -5' |
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| 6512 | 5' | -58.7 | NC_001847.1 | + | 42995 | 0.71 | 0.459719 |
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Target: 5'- -cCGGGaaCGCCgccGGGGGGGCgcGCCg -3' miRNA: 3'- aaGUCCacGCGGa--CCCUCCCGaaUGG- -5' |
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| 6512 | 5' | -58.7 | NC_001847.1 | + | 125445 | 0.72 | 0.40589 |
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Target: 5'- -gCAGGgcGCGUCcgGGGAGGGCggGCUu -3' miRNA: 3'- aaGUCCa-CGCGGa-CCCUCCCGaaUGG- -5' |
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| 6512 | 5' | -58.7 | NC_001847.1 | + | 22632 | 0.72 | 0.40589 |
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Target: 5'- -gCAGGgcGCGUCcgGGGAGGGCggGCUu -3' miRNA: 3'- aaGUCCa-CGCGGa-CCCUCCCGaaUGG- -5' |
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| 6512 | 5' | -58.7 | NC_001847.1 | + | 14141 | 0.74 | 0.310946 |
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Target: 5'- -gCGGGgcccGCGCCUGGGcggccgcuAGGGCgacgGCCg -3' miRNA: 3'- aaGUCCa---CGCGGACCC--------UCCCGaa--UGG- -5' |
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| 6512 | 5' | -58.7 | NC_001847.1 | + | 108525 | 1.09 | 0.001215 |
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Target: 5'- gUUCAGGUGCGCCUGGGAGGGCUUACCu -3' miRNA: 3'- -AAGUCCACGCGGACCCUCCCGAAUGG- -5' |
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| 6512 | 5' | -58.7 | NC_001847.1 | + | 5712 | 1.09 | 0.001215 |
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Target: 5'- gUUCAGGUGCGCCUGGGAGGGCUUACCu -3' miRNA: 3'- -AAGUCCACGCGGACCCUCCCGAAUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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