miRNA display CGI


Results 21 - 40 of 758 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6513 5' -60 NC_001847.1 + 30496 0.66 0.730075
Target:  5'- gCcgGGCgCugGaCGGGCgCGCCggACGUGa -3'
miRNA:   3'- aGuaCCG-GugC-GUCCG-GCGG--UGCACg -5'
6513 5' -60 NC_001847.1 + 105371 0.66 0.730075
Target:  5'- ---cGGCCAgaGCccGGCCGCCAgG-GCc -3'
miRNA:   3'- aguaCCGGUg-CGu-CCGGCGGUgCaCG- -5'
6513 5' -60 NC_001847.1 + 491 0.66 0.730075
Target:  5'- ---cGGCgGCG-GGGCgGCCGCGcGCc -3'
miRNA:   3'- aguaCCGgUGCgUCCGgCGGUGCaCG- -5'
6513 5' -60 NC_001847.1 + 81299 0.66 0.730075
Target:  5'- cCAgcGCCGC-CAGcGCCGCCGC-UGCc -3'
miRNA:   3'- aGUacCGGUGcGUC-CGGCGGUGcACG- -5'
6513 5' -60 NC_001847.1 + 61632 0.66 0.730075
Target:  5'- aCAUGcGCCcgcuggACuGCAGcGCCGCCACc-GCg -3'
miRNA:   3'- aGUAC-CGG------UG-CGUC-CGGCGGUGcaCG- -5'
6513 5' -60 NC_001847.1 + 95787 0.66 0.730075
Target:  5'- nCGgggGGCgGCGCGGGC-GCauuaCugGUGCu -3'
miRNA:   3'- aGUa--CCGgUGCGUCCGgCG----GugCACG- -5'
6513 5' -60 NC_001847.1 + 5234 0.66 0.730075
Target:  5'- gCAUGGCUccgUGCAGGUCuCCGCGggggaggggGCg -3'
miRNA:   3'- aGUACCGGu--GCGUCCGGcGGUGCa--------CG- -5'
6513 5' -60 NC_001847.1 + 62159 0.66 0.729106
Target:  5'- ---cGGCCagcucccGCGCGGGCgCGuCCGCGUc- -3'
miRNA:   3'- aguaCCGG-------UGCGUCCG-GC-GGUGCAcg -5'
6513 5' -60 NC_001847.1 + 44867 0.66 0.729106
Target:  5'- aCGUcGCCGCGCcgcucaaAGGCCGCgugaACGaGCg -3'
miRNA:   3'- aGUAcCGGUGCG-------UCCGGCGg---UGCaCG- -5'
6513 5' -60 NC_001847.1 + 5588 0.66 0.729106
Target:  5'- -gGUGGCCGCGCGguagcuccacucGGUagacgggcgugggCGCCGCGgucccGCg -3'
miRNA:   3'- agUACCGGUGCGU------------CCG-------------GCGGUGCa----CG- -5'
6513 5' -60 NC_001847.1 + 118767 0.66 0.724252
Target:  5'- gUUGUGGCgCGCGguGugagcggcaccggcaGCCGCCAgcgccuccaggcCGUGCc -3'
miRNA:   3'- -AGUACCG-GUGCguC---------------CGGCGGU------------GCACG- -5'
6513 5' -60 NC_001847.1 + 6328 0.66 0.724252
Target:  5'- ---cGGCCACGUAcgcgggugccccggcGGCaaccgCGCCGCGgGCg -3'
miRNA:   3'- aguaCCGGUGCGU---------------CCG-----GCGGUGCaCG- -5'
6513 5' -60 NC_001847.1 + 33150 0.66 0.720355
Target:  5'- gCGUGGCgaGCGCGgcGGUugCGCCGC-UGCa -3'
miRNA:   3'- aGUACCGg-UGCGU--CCG--GCGGUGcACG- -5'
6513 5' -60 NC_001847.1 + 131159 0.66 0.720355
Target:  5'- gCggGGCCGCGCgcccGGGCC-CC-CG-GCg -3'
miRNA:   3'- aGuaCCGGUGCG----UCCGGcGGuGCaCG- -5'
6513 5' -60 NC_001847.1 + 69332 0.66 0.720355
Target:  5'- ---gGGCCucggGCGCugcuGGCgGCgCugGUGCu -3'
miRNA:   3'- aguaCCGG----UGCGu---CCGgCG-GugCACG- -5'
6513 5' -60 NC_001847.1 + 67453 0.66 0.720355
Target:  5'- cUCGaGGUCcagcgcGCGCGcGGCgGCCGCG-GCg -3'
miRNA:   3'- -AGUaCCGG------UGCGU-CCGgCGGUGCaCG- -5'
6513 5' -60 NC_001847.1 + 29033 0.66 0.720355
Target:  5'- cCAgaGCCGCGCGcGCCGgCagACGUGCu -3'
miRNA:   3'- aGUacCGGUGCGUcCGGCgG--UGCACG- -5'
6513 5' -60 NC_001847.1 + 16346 0.66 0.720355
Target:  5'- gCAcGGCCuggagGCGCuggcGGCUGCCG-GUGCc -3'
miRNA:   3'- aGUaCCGG-----UGCGu---CCGGCGGUgCACG- -5'
6513 5' -60 NC_001847.1 + 8064 0.66 0.720355
Target:  5'- ---cGGCCcgcGCGCAGaggggggcaCCGCCGCG-GCg -3'
miRNA:   3'- aguaCCGG---UGCGUCc--------GGCGGUGCaCG- -5'
6513 5' -60 NC_001847.1 + 7251 0.66 0.720355
Target:  5'- -gGUGGCUGUGCGGG-CGCgGCGgggGCa -3'
miRNA:   3'- agUACCGGUGCGUCCgGCGgUGCa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.