miRNA display CGI


Results 81 - 100 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 103297 0.66 0.297185
Target:  5'- gGCGaGCCCggGCGCgcgaacguagggucCUCgCaCUCUGCCCCCg -3'
miRNA:   3'- gCGC-CGGG--CGCG--------------GAG-G-GGGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 93320 0.66 0.280681
Target:  5'- aGCccugGGaCCCGCGCCgCCCgCCCGCgCg- -3'
miRNA:   3'- gCG----CC-GGGCGCGGaGGG-GGGCGgGgg -5'
6514 3' -71 NC_001847.1 + 130959 0.66 0.305397
Target:  5'- gCGCGGCCCacgggcGCGCggCCCaaaacaaggCCCGCUCgCu -3'
miRNA:   3'- -GCGCCGGG------CGCGgaGGG---------GGGCGGGgG- -5'
6514 3' -71 NC_001847.1 + 78838 0.66 0.292835
Target:  5'- uCGCGGCCCGcCGCgCgacgCCgCagaCUGCUUCCa -3'
miRNA:   3'- -GCGCCGGGC-GCG-Ga---GG-Gg--GGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 93475 0.66 0.278892
Target:  5'- gGCGuGUCCGUGCUcuuccagggguacuUCUCgCgGCCCCCc -3'
miRNA:   3'- gCGC-CGGGCGCGG--------------AGGGgGgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 32156 0.66 0.279487
Target:  5'- gGgGGCCCcggGgGCCaagacgcagaaCCCCgGCCCCCc -3'
miRNA:   3'- gCgCCGGG---CgCGGag---------GGGGgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 59348 0.66 0.274168
Target:  5'- gGCGGCgaggucgcgcgCCGCGCCgagCCCgCgGCCguguucaCCCg -3'
miRNA:   3'- gCGCCG-----------GGCGCGGa--GGGgGgCGG-------GGG- -5'
6514 3' -71 NC_001847.1 + 29886 0.66 0.305397
Target:  5'- cCGCGGCggaGUGCCUgCCgCCCgaagugCGCCCgCCu -3'
miRNA:   3'- -GCGCCGgg-CGCGGA-GG-GGG------GCGGG-GG- -5'
6514 3' -71 NC_001847.1 + 57520 0.66 0.305397
Target:  5'- gGCGGCgCGcCGuCCUCgCCCagcggCGCCgCCa -3'
miRNA:   3'- gCGCCGgGC-GC-GGAGgGGG-----GCGGgGG- -5'
6514 3' -71 NC_001847.1 + 102302 0.66 0.299065
Target:  5'- --gGGCCCgGCGUCguagUCCUCGCCCCa -3'
miRNA:   3'- gcgCCGGG-CGCGGag--GGGGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 125021 0.66 0.298437
Target:  5'- gGCcgGGCCCGCucGCCgcgaaggcggcuuUCCCCgCCGCUugugcuCCCg -3'
miRNA:   3'- gCG--CCGGGCG--CGG-------------AGGGG-GGCGG------GGG- -5'
6514 3' -71 NC_001847.1 + 54606 0.66 0.299065
Target:  5'- gCGCGcGCCCGCGCCgaugCCgaCgUGCgCCg -3'
miRNA:   3'- -GCGC-CGGGCGCGGa---GGg-GgGCGgGGg -5'
6514 3' -71 NC_001847.1 + 4930 0.66 0.274755
Target:  5'- gGCGGCaacaGCGCC-CCCCCgaGCaaCCUCg -3'
miRNA:   3'- gCGCCGgg--CGCGGaGGGGGg-CG--GGGG- -5'
6514 3' -71 NC_001847.1 + 25849 0.66 0.305397
Target:  5'- aCGCGucGCUCGCcaucuugcucGCCcCCCucgcuugcagCCCGCCCCUg -3'
miRNA:   3'- -GCGC--CGGGCG----------CGGaGGG----------GGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 82108 0.66 0.299065
Target:  5'- gGC-GCCUGCGUUUgCgCCUGCCgCCCg -3'
miRNA:   3'- gCGcCGGGCGCGGAgGgGGGCGG-GGG- -5'
6514 3' -71 NC_001847.1 + 38676 0.66 0.292835
Target:  5'- cCGCcGCCCGCaaGCCUggUCUCCgcagCGCCUCCa -3'
miRNA:   3'- -GCGcCGGGCG--CGGA--GGGGG----GCGGGGG- -5'
6514 3' -71 NC_001847.1 + 120906 0.66 0.305397
Target:  5'- aGCgGGCUCgGCGUUUgCCCUcaccaCGCCCCCn -3'
miRNA:   3'- gCG-CCGGG-CGCGGAgGGGG-----GCGGGGG- -5'
6514 3' -71 NC_001847.1 + 24239 0.66 0.280681
Target:  5'- aCGUgGGUCgGCGCCUCgCCgUgguggacagGCCCCCc -3'
miRNA:   3'- -GCG-CCGGgCGCGGAGgGGgG---------CGGGGG- -5'
6514 3' -71 NC_001847.1 + 2230 0.66 0.299065
Target:  5'- uCGCGGCCguggaacaugaGCGUCUCCCaggugacgcggCgGCCCUCg -3'
miRNA:   3'- -GCGCCGGg----------CGCGGAGGGg----------GgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 9502 0.66 0.271248
Target:  5'- gGUGGaCCaggGCgacauugcgagguaaGCCagguUCCCCUCGCCCCCc -3'
miRNA:   3'- gCGCC-GGg--CG---------------CGG----AGGGGGGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.