miRNA display CGI


Results 101 - 120 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 124546 0.66 0.292835
Target:  5'- gCGCgGGCCgGCGCCggCCCgCGCgCgCg -3'
miRNA:   3'- -GCG-CCGGgCGCGGagGGGgGCGgGgG- -5'
6514 3' -71 NC_001847.1 + 77464 0.66 0.26893
Target:  5'- cCGCGGCgcccagcaccaCCGUGCCcaCCgCCUGCCCg- -3'
miRNA:   3'- -GCGCCG-----------GGCGCGGa-GGgGGGCGGGgg -5'
6514 3' -71 NC_001847.1 + 78838 0.66 0.292835
Target:  5'- uCGCGGCCCGcCGCgCgacgCCgCagaCUGCUUCCa -3'
miRNA:   3'- -GCGCCGGGC-GCG-Ga---GG-Gg--GGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 134861 0.66 0.286707
Target:  5'- gGC-GCCCGCGCgggCUCggcggCCCCCgggcucggGCCCCUg -3'
miRNA:   3'- gCGcCGGGCGCG---GAG-----GGGGG--------CGGGGG- -5'
6514 3' -71 NC_001847.1 + 92224 0.67 0.263205
Target:  5'- gGCGGCCagcagCGCGCgCUCUCgagCCGCCUgCa -3'
miRNA:   3'- gCGCCGG-----GCGCG-GAGGGg--GGCGGGgG- -5'
6514 3' -71 NC_001847.1 + 65060 0.67 0.263205
Target:  5'- uGUGGCCCGUGuCCUacaUCCCCGCa--- -3'
miRNA:   3'- gCGCCGGGCGC-GGAg--GGGGGCGgggg -5'
6514 3' -71 NC_001847.1 + 1158 0.67 0.263205
Target:  5'- cCGauGCCgCGCGCgCUCCCa--GCCCCg -3'
miRNA:   3'- -GCgcCGG-GCGCG-GAGGGgggCGGGGg -5'
6514 3' -71 NC_001847.1 + 62021 0.67 0.230917
Target:  5'- cCGCGaGCaCgGCGgCUaCCUCCGCCaCCCg -3'
miRNA:   3'- -GCGC-CG-GgCGCgGAgGGGGGCGG-GGG- -5'
6514 3' -71 NC_001847.1 + 37286 0.67 0.263205
Target:  5'- aCGCGGgCC--GCCUUUCCCCGUCCg- -3'
miRNA:   3'- -GCGCCgGGcgCGGAGGGGGGCGGGgg -5'
6514 3' -71 NC_001847.1 + 132877 0.67 0.259257
Target:  5'- gGCGGCUuccgccgCGUGCCgCCCggggacuaccacacgCCCGCgCCCa -3'
miRNA:   3'- gCGCCGG-------GCGCGGaGGG---------------GGGCGgGGG- -5'
6514 3' -71 NC_001847.1 + 16308 0.67 0.230917
Target:  5'- uCGC-GCUCGCGCCcucggCUCCgCGCCCUa -3'
miRNA:   3'- -GCGcCGGGCGCGGa----GGGGgGCGGGGg -5'
6514 3' -71 NC_001847.1 + 134391 0.67 0.257579
Target:  5'- gGCGGgCCG-GCCUCgCCCUagggggGCCCgCg -3'
miRNA:   3'- gCGCCgGGCgCGGAGgGGGG------CGGGgG- -5'
6514 3' -71 NC_001847.1 + 81819 0.67 0.257579
Target:  5'- gGCGGCggggCGCGCCgUCUgUCGCCCgCCg -3'
miRNA:   3'- gCGCCGg---GCGCGGaGGGgGGCGGG-GG- -5'
6514 3' -71 NC_001847.1 + 93802 0.67 0.257579
Target:  5'- gCGCGGCCgCGCgGCCgagUCCCCGCUg-- -3'
miRNA:   3'- -GCGCCGG-GCG-CGGag-GGGGGCGGggg -5'
6514 3' -71 NC_001847.1 + 58391 0.67 0.257579
Target:  5'- uGCGuGCCCcccgcccgaGCGCCcgaccgUCCuuCCCCGCCCgaCCg -3'
miRNA:   3'- gCGC-CGGG---------CGCGG------AGG--GGGGCGGG--GG- -5'
6514 3' -71 NC_001847.1 + 50382 0.67 0.254251
Target:  5'- gGaCGGCgCCGCcgccgGCUUCCaCCgcuucuaccagaucgCCGCCCCCu -3'
miRNA:   3'- gC-GCCG-GGCG-----CGGAGG-GG---------------GGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 44275 0.67 0.252053
Target:  5'- -aCGGcCCCG-GCCUCgacaccagCCCCgGCCCCg -3'
miRNA:   3'- gcGCC-GGGCgCGGAG--------GGGGgCGGGGg -5'
6514 3' -71 NC_001847.1 + 39589 0.67 0.262072
Target:  5'- gGUGGCCCcaGCGCUgcugcggcgcggCCCCa-GCCCCa -3'
miRNA:   3'- gCGCCGGG--CGCGGa-----------GGGGggCGGGGg -5'
6514 3' -71 NC_001847.1 + 105505 0.67 0.263205
Target:  5'- cCGgGuccGCCCGCGgCg-CCCCgGCCCUCa -3'
miRNA:   3'- -GCgC---CGGGCGCgGagGGGGgCGGGGG- -5'
6514 3' -71 NC_001847.1 + 120699 0.67 0.263205
Target:  5'- cCGCGG-CCGCGCa--CCCCgGCgCCg -3'
miRNA:   3'- -GCGCCgGGCGCGgagGGGGgCGgGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.